Cluster: HRGMv2_2106_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2106
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2106_57 | HRGMv2_2106_57_2 | 2484 | 4997 | + | GH31_2 |
| TC | HRGMv2_2106_57 | HRGMv2_2106_57_3 | 5017 | 6060 | + | 2.A.56.1.3 |
| pfam | HRGMv2_2106_57 | HRGMv2_2106_57_4 | 6063 | 6551 | + | DctQ |
| TC | HRGMv2_2106_57 | HRGMv2_2106_57_5 | 6627 | 7928 | + | 2.A.56.1.5 |
Gene ID: HRGMv2_2106_57_2
Type: CAZyme
Location: 2484 - 4997 (+)
Type: CAZyme
Location: 2484 - 4997 (+)
Gene ID: HRGMv2_2106_57_3
Type: TC
Location: 5017 - 6060 (+)
Type: TC
Location: 5017 - 6060 (+)
Gene ID: HRGMv2_2106_57_4
Type: pfam
Location: 6063 - 6551 (+)
Type: pfam
Location: 6063 - 6551 (+)
Gene ID: HRGMv2_2106_57_5
Type: TC
Location: 6627 - 7928 (+)
Type: TC
Location: 6627 - 7928 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2106_57_5 | vegetarian > omnivore | 1.57020 | 0.01684 |
| HRGMv2_2106_57_5 | vegetarian > vegan | 2.36646 | 0.00180 |