Cluster: HRGMv2_2106_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2106
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2106_34 | HRGMv2_2106_34_16 | 16932 | 18512 | - | GH77 |
| STP | HRGMv2_2106_34 | HRGMv2_2106_34_17 | 18711 | 19178 | - | CheW |
| pfam | HRGMv2_2106_34 | HRGMv2_2106_34_18 | 19200 | 20312 | - | RF-1 | PCRF |
| TC | HRGMv2_2106_34 | HRGMv2_2106_34_19 | 20582 | 23149 | - | 3.A.5.1.3 |
| pfam | HRGMv2_2106_34 | HRGMv2_2106_34_20 | 23307 | 23837 | - | Ribosomal_S30AE | Ribosom_S30AE_C |
| pfam | HRGMv2_2106_34 | HRGMv2_2106_34_21 | 25029 | 25766 | + | adh_short | KR | adh_short_C2 |
| TC | HRGMv2_2106_34 | HRGMv2_2106_34_22 | 25875 | 27044 | - | 2.A.4.7.4 |
Gene ID: HRGMv2_2106_34_16
Type: CAZyme
Location: 16932 - 18512 (-)
Type: CAZyme
Location: 16932 - 18512 (-)
Gene ID: HRGMv2_2106_34_17
Type: STP
Location: 18711 - 19178 (-)
Type: STP
Location: 18711 - 19178 (-)
Gene ID: HRGMv2_2106_34_18
Type: pfam
Location: 19200 - 20312 (-)
Type: pfam
Location: 19200 - 20312 (-)
Gene ID: HRGMv2_2106_34_19
Type: TC
Location: 20582 - 23149 (-)
Type: TC
Location: 20582 - 23149 (-)
Gene ID: HRGMv2_2106_34_20
Type: pfam
Location: 23307 - 23837 (-)
Type: pfam
Location: 23307 - 23837 (-)
Gene ID: HRGMv2_2106_34_21
Type: pfam
Location: 25029 - 25766 (+)
Type: pfam
Location: 25029 - 25766 (+)
Gene ID: HRGMv2_2106_34_22
Type: TC
Location: 25875 - 27044 (-)
Type: TC
Location: 25875 - 27044 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.