Cluster: HRGMv2_2106_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2106
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_30 | HRGMv2_2106_30_21 | 24206 | 25468 | - | 1.B.52.2.1 |
| CAZyme | HRGMv2_2106_30 | HRGMv2_2106_30_22 | 25669 | 28305 | - | GH2 |
| STP | HRGMv2_2106_30 | HRGMv2_2106_30_23 | 28419 | 28946 | - | cNMP_binding |
| TC | HRGMv2_2106_30 | HRGMv2_2106_30_24 | 29362 | 30162 | + | 9.B.143.2.2 |
| TF | HRGMv2_2106_30 | HRGMv2_2106_30_25 | 30303 | 31199 | - | HTH_1 |
| CAZyme | HRGMv2_2106_30 | HRGMv2_2106_30_26 | 31520 | 33139 | - | CBM91 | GH43_12 |
Gene ID: HRGMv2_2106_30_21
Type: TC
Location: 24206 - 25468 (-)
Type: TC
Location: 24206 - 25468 (-)
Gene ID: HRGMv2_2106_30_22
Type: CAZyme
Location: 25669 - 28305 (-)
Type: CAZyme
Location: 25669 - 28305 (-)
Gene ID: HRGMv2_2106_30_23
Type: STP
Location: 28419 - 28946 (-)
Type: STP
Location: 28419 - 28946 (-)
Gene ID: HRGMv2_2106_30_24
Type: TC
Location: 29362 - 30162 (+)
Type: TC
Location: 29362 - 30162 (+)
Gene ID: HRGMv2_2106_30_25
Type: TF
Location: 30303 - 31199 (-)
Type: TF
Location: 30303 - 31199 (-)
Gene ID: HRGMv2_2106_30_26
Type: CAZyme
Location: 31520 - 33139 (-)
Type: CAZyme
Location: 31520 - 33139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.