Cluster: HRGMv2_2106_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_09958
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_23 | HRGMv2_2106_23_33 | 37055 | 38089 | + | 3.A.1.13.2 |
| TC | HRGMv2_2106_23 | HRGMv2_2106_23_34 | 38115 | 39224 | + | 3.A.1.13.2 |
| CAZyme | HRGMv2_2106_23 | HRGMv2_2106_23_35 | 39332 | 40387 | + | CE4 |
| pfam | HRGMv2_2106_23 | HRGMv2_2106_23_36 | 40796 | 41296 | + | GreA_GreB | GreA_GreB_N |
| TC | HRGMv2_2106_23 | HRGMv2_2106_23_37 | 41716 | 43059 | + | 1.A.26.1.2 |
Gene ID: HRGMv2_2106_23_33
Type: TC
Location: 37055 - 38089 (+)
Type: TC
Location: 37055 - 38089 (+)
Gene ID: HRGMv2_2106_23_34
Type: TC
Location: 38115 - 39224 (+)
Type: TC
Location: 38115 - 39224 (+)
Gene ID: HRGMv2_2106_23_35
Type: CAZyme
Location: 39332 - 40387 (+)
Type: CAZyme
Location: 39332 - 40387 (+)
Gene ID: HRGMv2_2106_23_36
Type: pfam
Location: 40796 - 41296 (+)
Type: pfam
Location: 40796 - 41296 (+)
Gene ID: HRGMv2_2106_23_37
Type: TC
Location: 41716 - 43059 (+)
Type: TC
Location: 41716 - 43059 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.