Cluster: HRGMv2_2106_CGC2
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_00036
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_97 | 119206 | 121494 | + | GH73 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_98 | 122010 | 122771 | + | GT2 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_99 | 122801 | 123832 | + | GT2 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_100 | 123871 | 124758 | + | GT2 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_101 | 124873 | 126060 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_2106_1 | HRGMv2_2106_1_102 | 126064 | 127266 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2106_1 | HRGMv2_2106_1_103 | 127266 | 127796 | + | RicinB_lectin_2 |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_104 | 127831 | 129303 | + | 2.A.66.2.16 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_105 | 129349 | 130953 | + | GH25 |
| pfam | HRGMv2_2106_1 | HRGMv2_2106_1_106 | 131022 | 131543 | + | RicinB_lectin_2 |
| pfam | HRGMv2_2106_1 | HRGMv2_2106_1_107 | 131567 | 132694 | + | Acyl_transf_3 |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_108 | 132900 | 134330 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_109 | 134374 | 135741 | + | GT4 |
| pfam | HRGMv2_2106_1 | HRGMv2_2106_1_110 | 135871 | 136971 | + | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_111 | 137012 | 138115 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_112 | 138112 | 139287 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_113 | 139320 | 140492 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_114 | 140522 | 141583 | + | GT113 |
| NULL(UNKNOWN) | HRGMv2_2106_1 | HRGMv2_2106_1_115 | 141635 | 142837 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_116 | 143141 | 145231 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_2106_1 | HRGMv2_2106_1_117 | 145249 | 145719 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_118 | 145776 | 146615 | + | GT2 |
| pfam | HRGMv2_2106_1 | HRGMv2_2106_1_119 | 146605 | 147630 | + | Acyl_transf_3 |
| STP | HRGMv2_2106_1 | HRGMv2_2106_1_120 | 147825 | 149291 | + | B12-binding |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_121 | 149378 | 150613 | + | GT4 |
Gene ID: HRGMv2_2106_1_97
Type: CAZyme
Location: 119206 - 121494 (+)
Type: CAZyme
Location: 119206 - 121494 (+)
Gene ID: HRGMv2_2106_1_98
Type: CAZyme
Location: 122010 - 122771 (+)
Type: CAZyme
Location: 122010 - 122771 (+)
Gene ID: HRGMv2_2106_1_99
Type: CAZyme
Location: 122801 - 123832 (+)
Type: CAZyme
Location: 122801 - 123832 (+)
Gene ID: HRGMv2_2106_1_100
Type: CAZyme
Location: 123871 - 124758 (+)
Type: CAZyme
Location: 123871 - 124758 (+)
Gene ID: HRGMv2_2106_1_101
Type: CAZyme
Location: 124873 - 126060 (+)
Type: CAZyme
Location: 124873 - 126060 (+)
Gene ID: HRGMv2_2106_1_102
Type:
Location: 126064 - 127266 (+)
Type:
Location: 126064 - 127266 (+)
Gene ID: HRGMv2_2106_1_103
Type: pfam
Location: 127266 - 127796 (+)
Type: pfam
Location: 127266 - 127796 (+)
Gene ID: HRGMv2_2106_1_104
Type: TC
Location: 127831 - 129303 (+)
Type: TC
Location: 127831 - 129303 (+)
Gene ID: HRGMv2_2106_1_105
Type: CAZyme
Location: 129349 - 130953 (+)
Type: CAZyme
Location: 129349 - 130953 (+)
Gene ID: HRGMv2_2106_1_106
Type: pfam
Location: 131022 - 131543 (+)
Type: pfam
Location: 131022 - 131543 (+)
Gene ID: HRGMv2_2106_1_107
Type: pfam
Location: 131567 - 132694 (+)
Type: pfam
Location: 131567 - 132694 (+)
Gene ID: HRGMv2_2106_1_108
Type: TC
Location: 132900 - 134330 (+)
Type: TC
Location: 132900 - 134330 (+)
Gene ID: HRGMv2_2106_1_109
Type: CAZyme
Location: 134374 - 135741 (+)
Type: CAZyme
Location: 134374 - 135741 (+)
Gene ID: HRGMv2_2106_1_110
Type: pfam
Location: 135871 - 136971 (+)
Type: pfam
Location: 135871 - 136971 (+)
Gene ID: HRGMv2_2106_1_111
Type: CAZyme
Location: 137012 - 138115 (+)
Type: CAZyme
Location: 137012 - 138115 (+)
Gene ID: HRGMv2_2106_1_112
Type: CAZyme
Location: 138112 - 139287 (+)
Type: CAZyme
Location: 138112 - 139287 (+)
Gene ID: HRGMv2_2106_1_113
Type: CAZyme
Location: 139320 - 140492 (+)
Type: CAZyme
Location: 139320 - 140492 (+)
Gene ID: HRGMv2_2106_1_114
Type: CAZyme
Location: 140522 - 141583 (+)
Type: CAZyme
Location: 140522 - 141583 (+)
Gene ID: HRGMv2_2106_1_115
Type:
Location: 141635 - 142837 (+)
Type:
Location: 141635 - 142837 (+)
Gene ID: HRGMv2_2106_1_116
Type: TC
Location: 143141 - 145231 (+)
Type: TC
Location: 143141 - 145231 (+)
Gene ID: HRGMv2_2106_1_117
Type:
Location: 145249 - 145719 (+)
Type:
Location: 145249 - 145719 (+)
Gene ID: HRGMv2_2106_1_118
Type: CAZyme
Location: 145776 - 146615 (+)
Type: CAZyme
Location: 145776 - 146615 (+)
Gene ID: HRGMv2_2106_1_119
Type: pfam
Location: 146605 - 147630 (+)
Type: pfam
Location: 146605 - 147630 (+)
Gene ID: HRGMv2_2106_1_120
Type: STP
Location: 147825 - 149291 (+)
Type: STP
Location: 147825 - 149291 (+)
Gene ID: HRGMv2_2106_1_121
Type: CAZyme
Location: 149378 - 150613 (+)
Type: CAZyme
Location: 149378 - 150613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2106_1_110 | vegan > omnivore | 1.37012 | 0.00701 |