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Cluster: HRGMv2_2106_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2106_21 HRGMv2_2106_21_23 23146 24342 + 9.B.10.1.1
pfam HRGMv2_2106_21 HRGMv2_2106_21_24 24377 25327 + cobW | DUF1980_C
STP HRGMv2_2106_21 HRGMv2_2106_21_25 25669 26712 + NUDIX
TC HRGMv2_2106_21 HRGMv2_2106_21_26 26824 27402 + 9.B.156.3.1
pfam HRGMv2_2106_21 HRGMv2_2106_21_27 27479 28009 + Gate
CAZyme HRGMv2_2106_21 HRGMv2_2106_21_28 28094 29074 - GH25
TC HRGMv2_2106_21 HRGMv2_2106_21_29 29577 30467 + 1.A.8.13.3
Gene ID: HRGMv2_2106_21_23
Type: TC
Location: 23146 - 24342 (+)
Gene ID: HRGMv2_2106_21_24
Type: pfam
Location: 24377 - 25327 (+)
Gene ID: HRGMv2_2106_21_25
Type: STP
Location: 25669 - 26712 (+)
Gene ID: HRGMv2_2106_21_26
Type: TC
Location: 26824 - 27402 (+)
Gene ID: HRGMv2_2106_21_27
Type: pfam
Location: 27479 - 28009 (+)
Gene ID: HRGMv2_2106_21_28
Type: CAZyme
Location: 28094 - 29074 (-)
Gene ID: HRGMv2_2106_21_29
Type: TC
Location: 29577 - 30467 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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