dbCAN Logo

Cluster: HRGMv2_2106_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2106_18 HRGMv2_2106_18_30 36885 37769 + 3.A.1.148.3
pfam HRGMv2_2106_18 HRGMv2_2106_18_31 38025 38471 - LMWPc
TF HRGMv2_2106_18 HRGMv2_2106_18_32 38772 39212 - MarR
TC HRGMv2_2106_18 HRGMv2_2106_18_33 39334 41226 - 3.A.1.135.5
TC HRGMv2_2106_18 HRGMv2_2106_18_34 41226 42953 - 3.A.1.135.5
pfam HRGMv2_2106_18 HRGMv2_2106_18_35 43298 44491 + Fe-ADH | ADH_Fe_C
pfam HRGMv2_2106_18 HRGMv2_2106_18_36 44798 47068 + Meth_synt_2 | Meth_synt_1
TC HRGMv2_2106_18 HRGMv2_2106_18_37 47304 49211 + 1.B.52.2.2
NULL(UNKNOWN) HRGMv2_2106_18 HRGMv2_2106_18_38 49462 50832 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2106_18 HRGMv2_2106_18_39 51005 51742 + GT2
Gene ID: HRGMv2_2106_18_30
Type: TC
Location: 36885 - 37769 (+)
Gene ID: HRGMv2_2106_18_31
Type: pfam
Location: 38025 - 38471 (-)
Gene ID: HRGMv2_2106_18_32
Type: TF
Location: 38772 - 39212 (-)
Gene ID: HRGMv2_2106_18_33
Type: TC
Location: 39334 - 41226 (-)
Gene ID: HRGMv2_2106_18_34
Type: TC
Location: 41226 - 42953 (-)
Gene ID: HRGMv2_2106_18_35
Type: pfam
Location: 43298 - 44491 (+)
Gene ID: HRGMv2_2106_18_36
Type: pfam
Location: 44798 - 47068 (+)
Gene ID: HRGMv2_2106_18_37
Type: TC
Location: 47304 - 49211 (+)
Gene ID: HRGMv2_2106_18_38
Type:
Location: 49462 - 50832 (+)
Gene ID: HRGMv2_2106_18_39
Type: CAZyme
Location: 51005 - 51742 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List