Cluster: HRGMv2_2106_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_08447
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_17 | HRGMv2_2106_17_28 | 24857 | 25894 | - | 2.A.98.1.4 |
| TF | HRGMv2_2106_17 | HRGMv2_2106_17_29 | 26010 | 26888 | + | HTH_1 |
| CAZyme | HRGMv2_2106_17 | HRGMv2_2106_17_30 | 26997 | 29291 | - | GT35 |
Gene ID: HRGMv2_2106_17_28
Type: TC
Location: 24857 - 25894 (-)
Type: TC
Location: 24857 - 25894 (-)
Gene ID: HRGMv2_2106_17_29
Type: TF
Location: 26010 - 26888 (+)
Type: TF
Location: 26010 - 26888 (+)
Gene ID: HRGMv2_2106_17_30
Type: CAZyme
Location: 26997 - 29291 (-)
Type: CAZyme
Location: 26997 - 29291 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2106_17_28 | vegan > omnivore | 1.10892 | 0.01025 |