Cluster: HRGMv2_2106_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2106
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_13 | HRGMv2_2106_13_1 | 390 | 1028 | - | 1.B.52.2.1 |
| STP | HRGMv2_2106_13 | HRGMv2_2106_13_2 | 1070 | 2449 | - | AAA |
| NULL(UNKNOWN) | HRGMv2_2106_13 | HRGMv2_2106_13_3 | 2952 | 3368 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2106_13 | HRGMv2_2106_13_4 | 3487 | 5949 | - | 3.A.9.1.2 |
| pfam | HRGMv2_2106_13 | HRGMv2_2106_13_5 | 6000 | 7034 | - | ATP-gua_Ptrans |
| pfam | HRGMv2_2106_13 | HRGMv2_2106_13_6 | 7027 | 7572 | - | UVR |
| TC | HRGMv2_2106_13 | HRGMv2_2106_13_7 | 7615 | 9177 | - | 2.A.66.2.14 |
| NULL(UNKNOWN) | HRGMv2_2106_13 | HRGMv2_2106_13_8 | 9297 | 10382 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2106_13 | HRGMv2_2106_13_9 | 10408 | 11697 | - | NAGPA |
| CAZyme | HRGMv2_2106_13 | HRGMv2_2106_13_10 | 11718 | 12773 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2106_13 | HRGMv2_2106_13_11 | 13012 | 13263 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_13 | HRGMv2_2106_13_12 | 13464 | 18827 | - | PL9_1 |
Gene ID: HRGMv2_2106_13_1
Type: TC
Location: 390 - 1028 (-)
Type: TC
Location: 390 - 1028 (-)
Gene ID: HRGMv2_2106_13_2
Type: STP
Location: 1070 - 2449 (-)
Type: STP
Location: 1070 - 2449 (-)
Gene ID: HRGMv2_2106_13_3
Type:
Location: 2952 - 3368 (-)
Type:
Location: 2952 - 3368 (-)
Gene ID: HRGMv2_2106_13_4
Type: TC
Location: 3487 - 5949 (-)
Type: TC
Location: 3487 - 5949 (-)
Gene ID: HRGMv2_2106_13_5
Type: pfam
Location: 6000 - 7034 (-)
Type: pfam
Location: 6000 - 7034 (-)
Gene ID: HRGMv2_2106_13_6
Type: pfam
Location: 7027 - 7572 (-)
Type: pfam
Location: 7027 - 7572 (-)
Gene ID: HRGMv2_2106_13_7
Type: TC
Location: 7615 - 9177 (-)
Type: TC
Location: 7615 - 9177 (-)
Gene ID: HRGMv2_2106_13_8
Type:
Location: 9297 - 10382 (-)
Type:
Location: 9297 - 10382 (-)
Gene ID: HRGMv2_2106_13_9
Type: pfam
Location: 10408 - 11697 (-)
Type: pfam
Location: 10408 - 11697 (-)
Gene ID: HRGMv2_2106_13_10
Type: CAZyme
Location: 11718 - 12773 (-)
Type: CAZyme
Location: 11718 - 12773 (-)
Gene ID: HRGMv2_2106_13_11
Type:
Location: 13012 - 13263 (+)
Type:
Location: 13012 - 13263 (+)
Gene ID: HRGMv2_2106_13_12
Type: CAZyme
Location: 13464 - 18827 (-)
Type: CAZyme
Location: 13464 - 18827 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.