Cluster: HRGMv2_2106_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_00491
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_79 | 95619 | 96716 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_80 | 96719 | 98005 | + | GT4 |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_81 | 98002 | 98778 | + | 3.A.1.103.4 |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_82 | 98827 | 100089 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_83 | 100107 | 101309 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_84 | 101285 | 102334 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_2106_1 | HRGMv2_2106_1_85 | 102434 | 103525 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2106_1 | HRGMv2_2106_1_86 | 103550 | 105139 | + | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_2106_1 | HRGMv2_2106_1_87 | 105280 | 105708 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_88 | 105753 | 106826 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_89 | 106848 | 108035 | + | GT4 |
| CAZyme | HRGMv2_2106_1 | HRGMv2_2106_1_90 | 108145 | 109320 | + | GT4 |
Gene ID: HRGMv2_2106_1_79
Type: CAZyme
Location: 95619 - 96716 (+)
Type: CAZyme
Location: 95619 - 96716 (+)
Gene ID: HRGMv2_2106_1_80
Type: CAZyme
Location: 96719 - 98005 (+)
Type: CAZyme
Location: 96719 - 98005 (+)
Gene ID: HRGMv2_2106_1_81
Type: TC
Location: 98002 - 98778 (+)
Type: TC
Location: 98002 - 98778 (+)
Gene ID: HRGMv2_2106_1_82
Type: TC
Location: 98827 - 100089 (+)
Type: TC
Location: 98827 - 100089 (+)
Gene ID: HRGMv2_2106_1_83
Type: CAZyme
Location: 100107 - 101309 (+)
Type: CAZyme
Location: 100107 - 101309 (+)
Gene ID: HRGMv2_2106_1_84
Type: CAZyme
Location: 101285 - 102334 (+)
Type: CAZyme
Location: 101285 - 102334 (+)
Gene ID: HRGMv2_2106_1_85
Type:
Location: 102434 - 103525 (+)
Type:
Location: 102434 - 103525 (+)
Gene ID: HRGMv2_2106_1_86
Type: TC
Location: 103550 - 105139 (+)
Type: TC
Location: 103550 - 105139 (+)
Gene ID: HRGMv2_2106_1_87
Type:
Location: 105280 - 105708 (+)
Type:
Location: 105280 - 105708 (+)
Gene ID: HRGMv2_2106_1_88
Type: CAZyme
Location: 105753 - 106826 (+)
Type: CAZyme
Location: 105753 - 106826 (+)
Gene ID: HRGMv2_2106_1_89
Type: CAZyme
Location: 106848 - 108035 (+)
Type: CAZyme
Location: 106848 - 108035 (+)
Gene ID: HRGMv2_2106_1_90
Type: CAZyme
Location: 108145 - 109320 (+)
Type: CAZyme
Location: 108145 - 109320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.