Cluster: HRGMv2_2105_CGC35
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_2 | HRGMv2_2105_2_181 | 199270 | 201345 | + | 3.A.3.32.3 |
| pfam | HRGMv2_2105_2 | HRGMv2_2105_2_182 | 201435 | 202190 | - | APH | EcKL |
| pfam | HRGMv2_2105_2 | HRGMv2_2105_2_183 | 202263 | 204869 | - | Aldedh | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | HRGMv2_2105_2 | HRGMv2_2105_2_184 | 205022 | 208228 | + | GH13_20 | GH13_9 |
Gene ID: HRGMv2_2105_2_181
Type: TC
Location: 199270 - 201345 (+)
Type: TC
Location: 199270 - 201345 (+)
Gene ID: HRGMv2_2105_2_182
Type: pfam
Location: 201435 - 202190 (-)
Type: pfam
Location: 201435 - 202190 (-)
Gene ID: HRGMv2_2105_2_183
Type: pfam
Location: 202263 - 204869 (-)
Type: pfam
Location: 202263 - 204869 (-)
Gene ID: HRGMv2_2105_2_184
Type: CAZyme
Location: 205022 - 208228 (+)
Type: CAZyme
Location: 205022 - 208228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_2_182 | vegetarian > vegan | 1.89617 | 0.01276 |
| HRGMv2_2105_2_184 | vegetarian > vegan | 1.94820 | 0.01276 |