Cluster: HRGMv2_2105_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_166 | 180715 | 187083 | - | CE12 | CE8 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_167 | 187430 | 192334 | - | CE12 | PL9_1 |
| STP | HRGMv2_2105_1 | HRGMv2_2105_1_168 | 192590 | 196156 | - | Fer4 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_169 | 196340 | 197554 | - | Lactamase_B | ODP |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_170 | 197848 | 199590 | - | 1.A.11.2.7 |
Gene ID: HRGMv2_2105_1_166
Type: CAZyme
Location: 180715 - 187083 (-)
Type: CAZyme
Location: 180715 - 187083 (-)
Gene ID: HRGMv2_2105_1_167
Type: CAZyme
Location: 187430 - 192334 (-)
Type: CAZyme
Location: 187430 - 192334 (-)
Gene ID: HRGMv2_2105_1_168
Type: STP
Location: 192590 - 196156 (-)
Type: STP
Location: 192590 - 196156 (-)
Gene ID: HRGMv2_2105_1_169
Type: pfam
Location: 196340 - 197554 (-)
Type: pfam
Location: 196340 - 197554 (-)
Gene ID: HRGMv2_2105_1_170
Type: TC
Location: 197848 - 199590 (-)
Type: TC
Location: 197848 - 199590 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_170 | vegan > omnivore | 1.41559 | 0.01960 |