Cluster: HRGMv2_2105_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1839 | 2047819 | 2049273 | + | CE12 |
| STP | HRGMv2_2105_1 | HRGMv2_2105_1_1840 | 2049296 | 2050513 | + | Aminotran_1_2 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1841 | 2050528 | 2051910 | + | 2.A.66.1.23 |
Gene ID: HRGMv2_2105_1_1839
Type: CAZyme
Location: 2047819 - 2049273 (+)
Type: CAZyme
Location: 2047819 - 2049273 (+)
Gene ID: HRGMv2_2105_1_1840
Type: STP
Location: 2049296 - 2050513 (+)
Type: STP
Location: 2049296 - 2050513 (+)
Gene ID: HRGMv2_2105_1_1841
Type: TC
Location: 2050528 - 2051910 (+)
Type: TC
Location: 2050528 - 2051910 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1839 | vegetarian > vegan | 2.37043 | 0.01276 |
| HRGMv2_2105_1_1840 | vegetarian > vegan | 1.94936 | 0.01276 |
| HRGMv2_2105_1_1841 | vegetarian > vegan | 1.64595 | 0.01276 |