Cluster: HRGMv2_2105_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1465 | 1612673 | 1615051 | + | GH31_15 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1466 | 1615614 | 1616867 | - | Transposase_mut |
| TF | HRGMv2_2105_1 | HRGMv2_2105_1_1467 | 1617026 | 1617847 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1468 | 1618039 | 1619418 | + | 2.A.2.3.4 |
Gene ID: HRGMv2_2105_1_1465
Type: CAZyme
Location: 1612673 - 1615051 (+)
Type: CAZyme
Location: 1612673 - 1615051 (+)
Gene ID: HRGMv2_2105_1_1466
Type: pfam
Location: 1615614 - 1616867 (-)
Type: pfam
Location: 1615614 - 1616867 (-)
Gene ID: HRGMv2_2105_1_1467
Type: TF
Location: 1617026 - 1617847 (-)
Type: TF
Location: 1617026 - 1617847 (-)
Gene ID: HRGMv2_2105_1_1468
Type: TC
Location: 1618039 - 1619418 (+)
Type: TC
Location: 1618039 - 1619418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1465 | vegan > omnivore | 1.37714 | 0.04992 |
| HRGMv2_2105_1_1467 | vegetarian > vegan | 1.08590 | 0.01276 |
| HRGMv2_2105_1_1468 | vegetarian > vegan | 1.05336 | 0.01276 |