Cluster: HRGMv2_2105_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1196 | 1332282 | 1333064 | + | 3.A.1.17.4 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1197 | 1333118 | 1334155 | + | 3.A.1.17.1 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1198 | 1334181 | 1334996 | + | 3.A.1.17.4 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1199 | 1335172 | 1336368 | + | Bmp |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1200 | 1336381 | 1338081 | + | 1.B.52.2.1 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_1201 | 1338453 | 1338677 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1202 | 1338731 | 1339822 | + | Fe-ADH | Fe-ADH_2 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1203 | 1340906 | 1341739 | + | CE4 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1204 | 1341878 | 1343638 | + | 3.A.1.106.2 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1205 | 1343744 | 1345867 | - | 1.B.52.2.1 |
| peptidase | HRGMv2_2105_1 | HRGMv2_2105_1_1206 | 1345885 | 1346841 | - | S09.UPC |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1207 | 1347040 | 1349157 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_2105_1_1196
Type: TC
Location: 1332282 - 1333064 (+)
Type: TC
Location: 1332282 - 1333064 (+)
Gene ID: HRGMv2_2105_1_1197
Type: TC
Location: 1333118 - 1334155 (+)
Type: TC
Location: 1333118 - 1334155 (+)
Gene ID: HRGMv2_2105_1_1198
Type: TC
Location: 1334181 - 1334996 (+)
Type: TC
Location: 1334181 - 1334996 (+)
Gene ID: HRGMv2_2105_1_1199
Type: pfam
Location: 1335172 - 1336368 (+)
Type: pfam
Location: 1335172 - 1336368 (+)
Gene ID: HRGMv2_2105_1_1200
Type: TC
Location: 1336381 - 1338081 (+)
Type: TC
Location: 1336381 - 1338081 (+)
Gene ID: HRGMv2_2105_1_1201
Type:
Location: 1338453 - 1338677 (+)
Type:
Location: 1338453 - 1338677 (+)
Gene ID: HRGMv2_2105_1_1202
Type: pfam
Location: 1338731 - 1339822 (+)
Type: pfam
Location: 1338731 - 1339822 (+)
Gene ID: HRGMv2_2105_1_1203
Type: CAZyme
Location: 1340906 - 1341739 (+)
Type: CAZyme
Location: 1340906 - 1341739 (+)
Gene ID: HRGMv2_2105_1_1204
Type: TC
Location: 1341878 - 1343638 (+)
Type: TC
Location: 1341878 - 1343638 (+)
Gene ID: HRGMv2_2105_1_1205
Type: TC
Location: 1343744 - 1345867 (-)
Type: TC
Location: 1343744 - 1345867 (-)
Gene ID: HRGMv2_2105_1_1206
Type: peptidase
Location: 1345885 - 1346841 (-)
Type: peptidase
Location: 1345885 - 1346841 (-)
Gene ID: HRGMv2_2105_1_1207
Type: TC
Location: 1347040 - 1349157 (+)
Type: TC
Location: 1347040 - 1349157 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1201 | vegetarian > vegan | 3.15153 | 0.01276 |
| HRGMv2_2105_1_1205 | vegetarian > vegan | 1.54687 | 0.01276 |