Cluster: HRGMv2_2105_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1048 | 1173689 | 1174375 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1049 | 1174430 | 1175518 | + | GT2 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1050 | 1175505 | 1177367 | + | 9.B.18.2.1 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1051 | 1177388 | 1178455 | + | GT4 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1052 | 1178577 | 1179671 | + | GT4 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1053 | 1179679 | 1180953 | + | GT4 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1054 | 1180950 | 1181726 | + | 3.A.1.103.4 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1055 | 1181749 | 1183011 | + | 3.A.1.103.4 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_1056 | 1183029 | 1183490 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1057 | 1183523 | 1184605 | + | GT4 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1058 | 1184609 | 1185790 | + | GT4 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1059 | 1185832 | 1187031 | + | GT4 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1060 | 1187021 | 1188070 | + | GT4 |
Gene ID: HRGMv2_2105_1_1048
Type: TC
Location: 1173689 - 1174375 (+)
Type: TC
Location: 1173689 - 1174375 (+)
Gene ID: HRGMv2_2105_1_1049
Type: CAZyme
Location: 1174430 - 1175518 (+)
Type: CAZyme
Location: 1174430 - 1175518 (+)
Gene ID: HRGMv2_2105_1_1050
Type: TC
Location: 1175505 - 1177367 (+)
Type: TC
Location: 1175505 - 1177367 (+)
Gene ID: HRGMv2_2105_1_1051
Type: CAZyme
Location: 1177388 - 1178455 (+)
Type: CAZyme
Location: 1177388 - 1178455 (+)
Gene ID: HRGMv2_2105_1_1052
Type: CAZyme
Location: 1178577 - 1179671 (+)
Type: CAZyme
Location: 1178577 - 1179671 (+)
Gene ID: HRGMv2_2105_1_1053
Type: CAZyme
Location: 1179679 - 1180953 (+)
Type: CAZyme
Location: 1179679 - 1180953 (+)
Gene ID: HRGMv2_2105_1_1054
Type: TC
Location: 1180950 - 1181726 (+)
Type: TC
Location: 1180950 - 1181726 (+)
Gene ID: HRGMv2_2105_1_1055
Type: TC
Location: 1181749 - 1183011 (+)
Type: TC
Location: 1181749 - 1183011 (+)
Gene ID: HRGMv2_2105_1_1056
Type:
Location: 1183029 - 1183490 (+)
Type:
Location: 1183029 - 1183490 (+)
Gene ID: HRGMv2_2105_1_1057
Type: CAZyme
Location: 1183523 - 1184605 (+)
Type: CAZyme
Location: 1183523 - 1184605 (+)
Gene ID: HRGMv2_2105_1_1058
Type: CAZyme
Location: 1184609 - 1185790 (+)
Type: CAZyme
Location: 1184609 - 1185790 (+)
Gene ID: HRGMv2_2105_1_1059
Type: CAZyme
Location: 1185832 - 1187031 (+)
Type: CAZyme
Location: 1185832 - 1187031 (+)
Gene ID: HRGMv2_2105_1_1060
Type: CAZyme
Location: 1187021 - 1188070 (+)
Type: CAZyme
Location: 1187021 - 1188070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1048 | vegetarian > vegan | 1.56430 | 0.01276 |
| HRGMv2_2105_1_1049 | vegetarian > vegan | 2.29019 | 0.01276 |
| HRGMv2_2105_1_1051 | vegetarian > vegan | 1.41806 | 0.01276 |
| HRGMv2_2105_1_1052 | vegetarian > vegan | 1.00478 | 0.01276 |
| HRGMv2_2105_1_1053 | vegetarian > vegan | 1.32845 | 0.01276 |
| HRGMv2_2105_1_1055 | vegetarian > vegan | 1.37433 | 0.01276 |
| HRGMv2_2105_1_1056 | vegetarian > vegan | 1.84631 | 0.01276 |
| HRGMv2_2105_1_1058 | vegetarian > vegan | 1.73207 | 0.01276 |
| HRGMv2_2105_1_1059 | vegetarian > vegan | 1.37918 | 0.01276 |
| HRGMv2_2105_1_1060 | vegetarian > vegan | 2.21864 | 0.01276 |