Cluster: HRGMv2_2105_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_860 | 942902 | 943765 | - | 1.E.12.1.3 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_861 | 943980 | 944462 | - | DUF2726 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_862 | 945217 | 946443 | + | 2.A.86.1.8 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_863 | 946580 | 950236 | - | CBM77 | PL1 | PL9_1 |
Gene ID: HRGMv2_2105_1_860
Type: TC
Location: 942902 - 943765 (-)
Type: TC
Location: 942902 - 943765 (-)
Gene ID: HRGMv2_2105_1_861
Type: pfam
Location: 943980 - 944462 (-)
Type: pfam
Location: 943980 - 944462 (-)
Gene ID: HRGMv2_2105_1_862
Type: TC
Location: 945217 - 946443 (+)
Type: TC
Location: 945217 - 946443 (+)
Gene ID: HRGMv2_2105_1_863
Type: CAZyme
Location: 946580 - 950236 (-)
Type: CAZyme
Location: 946580 - 950236 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_860 | vegetarian > vegan | 1.57513 | 0.01276 |