Cluster: HRGMv2_2094_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00270
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_2 | HRGMv2_2094_2_25 | 23503 | 24954 | + | GT5 |
| pfam | HRGMv2_2094_2 | HRGMv2_2094_2_26 | 24958 | 25854 | - | DUF5688 |
| TC | HRGMv2_2094_2 | HRGMv2_2094_2_27 | 26050 | 27126 | - | 3.A.1.11.7 |
| TC | HRGMv2_2094_2 | HRGMv2_2094_2_28 | 27136 | 27918 | - | 3.A.1.11.8 |
| TC | HRGMv2_2094_2 | HRGMv2_2094_2_29 | 27912 | 28736 | - | 3.A.1.11.1 |
| TC | HRGMv2_2094_2 | HRGMv2_2094_2_30 | 28729 | 29802 | - | 3.A.1.11.8 |
Gene ID: HRGMv2_2094_2_25
Type: CAZyme
Location: 23503 - 24954 (+)
Type: CAZyme
Location: 23503 - 24954 (+)
Gene ID: HRGMv2_2094_2_26
Type: pfam
Location: 24958 - 25854 (-)
Type: pfam
Location: 24958 - 25854 (-)
Gene ID: HRGMv2_2094_2_27
Type: TC
Location: 26050 - 27126 (-)
Type: TC
Location: 26050 - 27126 (-)
Gene ID: HRGMv2_2094_2_28
Type: TC
Location: 27136 - 27918 (-)
Type: TC
Location: 27136 - 27918 (-)
Gene ID: HRGMv2_2094_2_29
Type: TC
Location: 27912 - 28736 (-)
Type: TC
Location: 27912 - 28736 (-)
Gene ID: HRGMv2_2094_2_30
Type: TC
Location: 28729 - 29802 (-)
Type: TC
Location: 28729 - 29802 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.