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Cluster: HRGMv2_2094_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2094_1 HRGMv2_2094_1_166 194395 196845 + GT2
pfam HRGMv2_2094_1 HRGMv2_2094_1_167 196851 199181 + Sulfatase
CAZyme HRGMv2_2094_1 HRGMv2_2094_1_168 199224 201125 + GT2 | GT2
NULL(UNKNOWN) HRGMv2_2094_1 HRGMv2_2094_1_169 201388 201597 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2094_1 HRGMv2_2094_1_170 201607 202560 + GT2
TC HRGMv2_2094_1 HRGMv2_2094_1_171 202715 204133 + 9.B.18.1.1
pfam HRGMv2_2094_1 HRGMv2_2094_1_172 204147 205268 + LytR_cpsA_psr
CAZyme HRGMv2_2094_1 HRGMv2_2094_1_173 205269 206276 + GT2
Gene ID: HRGMv2_2094_1_166
Type: CAZyme
Location: 194395 - 196845 (+)
Gene ID: HRGMv2_2094_1_167
Type: pfam
Location: 196851 - 199181 (+)
Gene ID: HRGMv2_2094_1_168
Type: CAZyme
Location: 199224 - 201125 (+)
Gene ID: HRGMv2_2094_1_169
Type:
Location: 201388 - 201597 (+)
Gene ID: HRGMv2_2094_1_170
Type: CAZyme
Location: 201607 - 202560 (+)
Gene ID: HRGMv2_2094_1_171
Type: TC
Location: 202715 - 204133 (+)
Gene ID: HRGMv2_2094_1_172
Type: pfam
Location: 204147 - 205268 (+)
Gene ID: HRGMv2_2094_1_173
Type: CAZyme
Location: 205269 - 206276 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2094_1_172 vegetarian > vegan 1.34512 0.00114

🧭 Explore Read Mapping of CGC

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