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Cluster: HRGMv2_2094_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2094_60 HRGMv2_2094_60_6 5001 6737 + GH18
pfam HRGMv2_2094_60 HRGMv2_2094_60_7 6861 7547 + Amidase_3
pfam HRGMv2_2094_60 HRGMv2_2094_60_8 7548 10712 - DUF6240 | DUF6240
TC HRGMv2_2094_60 HRGMv2_2094_60_9 10843 11130 + 2.A.7.2.1
NULL(UNKNOWN) HRGMv2_2094_60 HRGMv2_2094_60_10 11231 11461 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2094_60 HRGMv2_2094_60_11 11464 11775 - DUF4258
CAZyme HRGMv2_2094_60 HRGMv2_2094_60_12 11858 13756 - CBM48 | GH13_9
pfam HRGMv2_2094_60 HRGMv2_2094_60_13 13816 16530 - TPR_6 | TPR_8
TC HRGMv2_2094_60 HRGMv2_2094_60_14 16537 17871 - 2.A.86.1.8
Gene ID: HRGMv2_2094_60_6
Type: CAZyme
Location: 5001 - 6737 (+)
Gene ID: HRGMv2_2094_60_7
Type: pfam
Location: 6861 - 7547 (+)
Gene ID: HRGMv2_2094_60_8
Type: pfam
Location: 7548 - 10712 (-)
Gene ID: HRGMv2_2094_60_9
Type: TC
Location: 10843 - 11130 (+)
Gene ID: HRGMv2_2094_60_10
Type:
Location: 11231 - 11461 (-)
Gene ID: HRGMv2_2094_60_11
Type: pfam
Location: 11464 - 11775 (-)
Gene ID: HRGMv2_2094_60_12
Type: CAZyme
Location: 11858 - 13756 (-)
Gene ID: HRGMv2_2094_60_13
Type: pfam
Location: 13816 - 16530 (-)
Gene ID: HRGMv2_2094_60_14
Type: TC
Location: 16537 - 17871 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2094_60_7 vegetarian > vegan 1.09069 0.00114
HRGMv2_2094_60_13 vegetarian > vegan 1.15865 0.00114

🧭 Explore Read Mapping of CGC

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