Cluster: HRGMv2_2094_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_01851
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_52 | HRGMv2_2094_52_9 | 8389 | 10557 | + | 3.A.1.135.6 |
| TC | HRGMv2_2094_52 | HRGMv2_2094_52_10 | 10550 | 12403 | + | 3.A.1.135.6 |
| pfam | HRGMv2_2094_52 | HRGMv2_2094_52_11 | 12400 | 13599 | - | IMS | IMS_HHH | IMS_C |
| pfam | HRGMv2_2094_52 | HRGMv2_2094_52_12 | 14127 | 15086 | + | Ldh_1_N | Ldh_1_C |
| CAZyme | HRGMv2_2094_52 | HRGMv2_2094_52_13 | 15130 | 16245 | + | GT111 |
Gene ID: HRGMv2_2094_52_9
Type: TC
Location: 8389 - 10557 (+)
Type: TC
Location: 8389 - 10557 (+)
Gene ID: HRGMv2_2094_52_10
Type: TC
Location: 10550 - 12403 (+)
Type: TC
Location: 10550 - 12403 (+)
Gene ID: HRGMv2_2094_52_11
Type: pfam
Location: 12400 - 13599 (-)
Type: pfam
Location: 12400 - 13599 (-)
Gene ID: HRGMv2_2094_52_12
Type: pfam
Location: 14127 - 15086 (+)
Type: pfam
Location: 14127 - 15086 (+)
Gene ID: HRGMv2_2094_52_13
Type: CAZyme
Location: 15130 - 16245 (+)
Type: CAZyme
Location: 15130 - 16245 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_52_11 | vegetarian > vegan | 1.62464 | 0.00114 |