Cluster: HRGMv2_2094_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00903
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_49 | HRGMv2_2094_49_8 | 7318 | 9669 | - | GH65 |
| STP | HRGMv2_2094_49 | HRGMv2_2094_49_9 | 9694 | 10590 | - | PIG-L |
| TC | HRGMv2_2094_49 | HRGMv2_2094_49_10 | 10617 | 11480 | - | 3.A.1.1.42 |
| TC | HRGMv2_2094_49 | HRGMv2_2094_49_11 | 11477 | 12379 | - | 3.A.1.1.28 |
| STP | HRGMv2_2094_49 | HRGMv2_2094_49_12 | 12471 | 13772 | - | SBP_bac_1 |
| TC | HRGMv2_2094_49 | HRGMv2_2094_49_13 | 13912 | 15642 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_2094_49_8
Type: CAZyme
Location: 7318 - 9669 (-)
Type: CAZyme
Location: 7318 - 9669 (-)
Gene ID: HRGMv2_2094_49_9
Type: STP
Location: 9694 - 10590 (-)
Type: STP
Location: 9694 - 10590 (-)
Gene ID: HRGMv2_2094_49_10
Type: TC
Location: 10617 - 11480 (-)
Type: TC
Location: 10617 - 11480 (-)
Gene ID: HRGMv2_2094_49_11
Type: TC
Location: 11477 - 12379 (-)
Type: TC
Location: 11477 - 12379 (-)
Gene ID: HRGMv2_2094_49_12
Type: STP
Location: 12471 - 13772 (-)
Type: STP
Location: 12471 - 13772 (-)
Gene ID: HRGMv2_2094_49_13
Type: TC
Location: 13912 - 15642 (-)
Type: TC
Location: 13912 - 15642 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_49_9 | vegetarian > omnivore | 1.16514 | 0.00245 |
| HRGMv2_2094_49_9 | vegetarian > vegan | 1.25253 | 0.00114 |
| HRGMv2_2094_49_10 | vegan > omnivore | 1.07029 | 0.02092 |
| HRGMv2_2094_49_10 | vegetarian > omnivore | 1.23525 | 0.00245 |
| HRGMv2_2094_49_11 | vegetarian > omnivore | 1.04742 | 0.00245 |
| HRGMv2_2094_49_11 | vegetarian > vegan | 1.48403 | 0.00114 |
| HRGMv2_2094_49_12 | vegetarian > omnivore | 1.04391 | 0.00245 |