Cluster: HRGMv2_2094_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_47 | HRGMv2_2094_47_12 | 15395 | 16537 | - | 2.A.86.1.3 |
| TC | HRGMv2_2094_47 | HRGMv2_2094_47_13 | 16729 | 17790 | - | 4.D.2.1.5 |
| NULL(UNKNOWN) | HRGMv2_2094_47 | HRGMv2_2094_47_14 | 17830 | 18399 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2094_47 | HRGMv2_2094_47_15 | 18428 | 19546 | - | GT2 |
| TC | HRGMv2_2094_47 | HRGMv2_2094_47_16 | 19664 | 21055 | - | 1.A.26.1.1 |
Gene ID: HRGMv2_2094_47_12
Type: TC
Location: 15395 - 16537 (-)
Type: TC
Location: 15395 - 16537 (-)
Gene ID: HRGMv2_2094_47_13
Type: TC
Location: 16729 - 17790 (-)
Type: TC
Location: 16729 - 17790 (-)
Gene ID: HRGMv2_2094_47_14
Type:
Location: 17830 - 18399 (-)
Type:
Location: 17830 - 18399 (-)
Gene ID: HRGMv2_2094_47_15
Type: CAZyme
Location: 18428 - 19546 (-)
Type: CAZyme
Location: 18428 - 19546 (-)
Gene ID: HRGMv2_2094_47_16
Type: TC
Location: 19664 - 21055 (-)
Type: TC
Location: 19664 - 21055 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_47_12 | vegetarian > vegan | 1.01965 | 0.00114 |
| HRGMv2_2094_47_13 | vegetarian > vegan | 1.10723 | 0.00114 |