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Cluster: HRGMv2_2094_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_4 7189 8049 + CE4
TF HRGMv2_2094_30 HRGMv2_2094_30_5 8137 8841 + LytTR
pfam HRGMv2_2094_30 HRGMv2_2094_30_6 8844 10109 + HATPase_c_5
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_7 10360 12282 + GH2
TC HRGMv2_2094_30 HRGMv2_2094_30_8 12316 13878 + 2.A.2.3.6
pfam HRGMv2_2094_30 HRGMv2_2094_30_9 13955 15637 + PDDEXK_9 | AAA-ATPase_like
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_10 16276 19281 + GH3
STP HRGMv2_2094_30 HRGMv2_2094_30_11 19538 19750 + FeoA
STP HRGMv2_2094_30 HRGMv2_2094_30_12 19844 20062 + FeoA
TC HRGMv2_2094_30 HRGMv2_2094_30_13 20211 22367 + 9.A.8.1.6
TF HRGMv2_2094_30 HRGMv2_2094_30_14 22650 23117 + FUR
pfam HRGMv2_2094_30 HRGMv2_2094_30_15 23326 24348 + Rotamase_2
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_16 24359 26944 + GH136
TF HRGMv2_2094_30 HRGMv2_2094_30_17 27025 28620 - HTH_AraC | HTH_AraC
TC HRGMv2_2094_30 HRGMv2_2094_30_18 28622 30412 - 8.A.59.2.1
STP HRGMv2_2094_30 HRGMv2_2094_30_19 30604 32016 + SBP_bac_1
TC HRGMv2_2094_30 HRGMv2_2094_30_20 32096 33007 + 3.A.1.1.18
TC HRGMv2_2094_30 HRGMv2_2094_30_21 33022 33876 + 3.A.1.1.18
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_22 33922 35340 + GH29
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_23 35374 37596 + GH95
CAZyme HRGMv2_2094_30 HRGMv2_2094_30_24 37608 38516 + GH112
Gene ID: HRGMv2_2094_30_4
Type: CAZyme
Location: 7189 - 8049 (+)
Gene ID: HRGMv2_2094_30_5
Type: TF
Location: 8137 - 8841 (+)
Gene ID: HRGMv2_2094_30_6
Type: pfam
Location: 8844 - 10109 (+)
Gene ID: HRGMv2_2094_30_7
Type: CAZyme
Location: 10360 - 12282 (+)
Gene ID: HRGMv2_2094_30_8
Type: TC
Location: 12316 - 13878 (+)
Gene ID: HRGMv2_2094_30_9
Type: pfam
Location: 13955 - 15637 (+)
Gene ID: HRGMv2_2094_30_10
Type: CAZyme
Location: 16276 - 19281 (+)
Gene ID: HRGMv2_2094_30_11
Type: STP
Location: 19538 - 19750 (+)
Gene ID: HRGMv2_2094_30_12
Type: STP
Location: 19844 - 20062 (+)
Gene ID: HRGMv2_2094_30_13
Type: TC
Location: 20211 - 22367 (+)
Gene ID: HRGMv2_2094_30_14
Type: TF
Location: 22650 - 23117 (+)
Gene ID: HRGMv2_2094_30_15
Type: pfam
Location: 23326 - 24348 (+)
Gene ID: HRGMv2_2094_30_16
Type: CAZyme
Location: 24359 - 26944 (+)
Gene ID: HRGMv2_2094_30_17
Type: TF
Location: 27025 - 28620 (-)
Gene ID: HRGMv2_2094_30_18
Type: TC
Location: 28622 - 30412 (-)
Gene ID: HRGMv2_2094_30_19
Type: STP
Location: 30604 - 32016 (+)
Gene ID: HRGMv2_2094_30_20
Type: TC
Location: 32096 - 33007 (+)
Gene ID: HRGMv2_2094_30_21
Type: TC
Location: 33022 - 33876 (+)
Gene ID: HRGMv2_2094_30_22
Type: CAZyme
Location: 33922 - 35340 (+)
Gene ID: HRGMv2_2094_30_23
Type: CAZyme
Location: 35374 - 37596 (+)
Gene ID: HRGMv2_2094_30_24
Type: CAZyme
Location: 37608 - 38516 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2094_30_10 vegetarian > vegan 1.11779 0.00114
HRGMv2_2094_30_11 vegetarian > omnivore 1.36626 0.00245
HRGMv2_2094_30_12 vegan > omnivore 1.19482 0.01875

🧭 Explore Read Mapping of CGC

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