Cluster: HRGMv2_2094_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_09957
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_20 | HRGMv2_2094_20_30 | 39827 | 44491 | + | CBM82 | CBM83 | GH13_41 |
| pfam | HRGMv2_2094_20 | HRGMv2_2094_20_31 | 44851 | 47283 | + | SBBP |
| TC | HRGMv2_2094_20 | HRGMv2_2094_20_32 | 47270 | 48190 | + | 3.A.1.1.20 |
| TC | HRGMv2_2094_20 | HRGMv2_2094_20_33 | 48187 | 49083 | + | 3.A.1.1.20 |
Gene ID: HRGMv2_2094_20_30
Type: CAZyme
Location: 39827 - 44491 (+)
Type: CAZyme
Location: 39827 - 44491 (+)
Gene ID: HRGMv2_2094_20_31
Type: pfam
Location: 44851 - 47283 (+)
Type: pfam
Location: 44851 - 47283 (+)
Gene ID: HRGMv2_2094_20_32
Type: TC
Location: 47270 - 48190 (+)
Type: TC
Location: 47270 - 48190 (+)
Gene ID: HRGMv2_2094_20_33
Type: TC
Location: 48187 - 49083 (+)
Type: TC
Location: 48187 - 49083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.