Cluster: HRGMv2_2094_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_04886
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_18 | HRGMv2_2094_18_40 | 39388 | 40836 | + | 8.A.59.2.1 |
| TF | HRGMv2_2094_18 | HRGMv2_2094_18_41 | 40841 | 41632 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2094_18 | HRGMv2_2094_18_42 | 41639 | 43306 | - | 3.A.1.20.1 |
| TC | HRGMv2_2094_18 | HRGMv2_2094_18_43 | 43294 | 44388 | - | 3.A.1.20.1 |
| TC | HRGMv2_2094_18 | HRGMv2_2094_18_44 | 44480 | 45670 | - | 3.A.1.20.1 |
| CAZyme | HRGMv2_2094_18 | HRGMv2_2094_18_45 | 45670 | 47982 | - | GH95 |
Gene ID: HRGMv2_2094_18_40
Type: TC
Location: 39388 - 40836 (+)
Type: TC
Location: 39388 - 40836 (+)
Gene ID: HRGMv2_2094_18_41
Type: TF
Location: 40841 - 41632 (+)
Type: TF
Location: 40841 - 41632 (+)
Gene ID: HRGMv2_2094_18_42
Type: TC
Location: 41639 - 43306 (-)
Type: TC
Location: 41639 - 43306 (-)
Gene ID: HRGMv2_2094_18_43
Type: TC
Location: 43294 - 44388 (-)
Type: TC
Location: 43294 - 44388 (-)
Gene ID: HRGMv2_2094_18_44
Type: TC
Location: 44480 - 45670 (-)
Type: TC
Location: 44480 - 45670 (-)
Gene ID: HRGMv2_2094_18_45
Type: CAZyme
Location: 45670 - 47982 (-)
Type: CAZyme
Location: 45670 - 47982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.