Cluster: HRGMv2_2094_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_03217
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_17 | HRGMv2_2094_17_47 | 47064 | 48737 | - | GH13_31 |
| CAZyme | HRGMv2_2094_17 | HRGMv2_2094_17_48 | 48750 | 51176 | - | GH31_15 |
| TC | HRGMv2_2094_17 | HRGMv2_2094_17_49 | 51180 | 51788 | - | 9.B.28.1.3 |
| CAZyme | HRGMv2_2094_17 | HRGMv2_2094_17_50 | 51806 | 54172 | - | GH65 |
| TC | HRGMv2_2094_17 | HRGMv2_2094_17_51 | 54190 | 55029 | - | 3.A.1.1.47 |
| TC | HRGMv2_2094_17 | HRGMv2_2094_17_52 | 55041 | 55934 | - | 3.A.1.1.47 |
Gene ID: HRGMv2_2094_17_47
Type: CAZyme
Location: 47064 - 48737 (-)
Type: CAZyme
Location: 47064 - 48737 (-)
Gene ID: HRGMv2_2094_17_48
Type: CAZyme
Location: 48750 - 51176 (-)
Type: CAZyme
Location: 48750 - 51176 (-)
Gene ID: HRGMv2_2094_17_49
Type: TC
Location: 51180 - 51788 (-)
Type: TC
Location: 51180 - 51788 (-)
Gene ID: HRGMv2_2094_17_50
Type: CAZyme
Location: 51806 - 54172 (-)
Type: CAZyme
Location: 51806 - 54172 (-)
Gene ID: HRGMv2_2094_17_51
Type: TC
Location: 54190 - 55029 (-)
Type: TC
Location: 54190 - 55029 (-)
Gene ID: HRGMv2_2094_17_52
Type: TC
Location: 55041 - 55934 (-)
Type: TC
Location: 55041 - 55934 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_17_48 | vegetarian > vegan | 2.00613 | 0.00114 |