Cluster: HRGMv2_2094_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_14 | HRGMv2_2094_14_23 | 28855 | 29535 | + | GT26 |
| TC | HRGMv2_2094_14 | HRGMv2_2094_14_24 | 29541 | 30422 | + | 2.A.115.1.2 |
| pfam | HRGMv2_2094_14 | HRGMv2_2094_14_25 | 30624 | 31712 | + | HTH_30 | GGDEF_2 |
| TC | HRGMv2_2094_14 | HRGMv2_2094_14_26 | 31728 | 32411 | + | 3.A.1.140.1 |
| pfam | HRGMv2_2094_14 | HRGMv2_2094_14_27 | 32401 | 33309 | + | FtsX | FtsX_ECD |
| STP | HRGMv2_2094_14 | HRGMv2_2094_14_28 | 33314 | 34528 | + | Peptidase_M23 |
| TC | HRGMv2_2094_14 | HRGMv2_2094_14_29 | 34768 | 36054 | + | 9.B.174.1.1 |
Gene ID: HRGMv2_2094_14_23
Type: CAZyme
Location: 28855 - 29535 (+)
Type: CAZyme
Location: 28855 - 29535 (+)
Gene ID: HRGMv2_2094_14_24
Type: TC
Location: 29541 - 30422 (+)
Type: TC
Location: 29541 - 30422 (+)
Gene ID: HRGMv2_2094_14_25
Type: pfam
Location: 30624 - 31712 (+)
Type: pfam
Location: 30624 - 31712 (+)
Gene ID: HRGMv2_2094_14_26
Type: TC
Location: 31728 - 32411 (+)
Type: TC
Location: 31728 - 32411 (+)
Gene ID: HRGMv2_2094_14_27
Type: pfam
Location: 32401 - 33309 (+)
Type: pfam
Location: 32401 - 33309 (+)
Gene ID: HRGMv2_2094_14_28
Type: STP
Location: 33314 - 34528 (+)
Type: STP
Location: 33314 - 34528 (+)
Gene ID: HRGMv2_2094_14_29
Type: TC
Location: 34768 - 36054 (+)
Type: TC
Location: 34768 - 36054 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_14_24 | vegetarian > omnivore | 1.21011 | 0.00245 |