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Cluster: HRGMv2_2094_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2094_12 HRGMv2_2094_12_49 54319 55494 - 2.A.1.65.8
pfam HRGMv2_2094_12 HRGMv2_2094_12_50 55833 56027 - Y1_Tnp
pfam HRGMv2_2094_12 HRGMv2_2094_12_51 56094 56291 - Y1_Tnp
TC HRGMv2_2094_12 HRGMv2_2094_12_52 56400 57326 - 2.A.66.1.32
pfam HRGMv2_2094_12 HRGMv2_2094_12_53 57323 58033 - RelA_SpoT
CAZyme HRGMv2_2094_12 HRGMv2_2094_12_54 58255 59766 - GH77
TF HRGMv2_2094_12 HRGMv2_2094_12_55 59801 60811 - LacI
TC HRGMv2_2094_12 HRGMv2_2094_12_56 60909 61781 - 3.A.1.1.45
TC HRGMv2_2094_12 HRGMv2_2094_12_57 61781 62623 - 3.A.1.1.45
TC HRGMv2_2094_12 HRGMv2_2094_12_58 62711 64123 - 3.A.1.1.45
TC HRGMv2_2094_12 HRGMv2_2094_12_59 64529 65788 + 2.A.49.9.2
TC HRGMv2_2094_12 HRGMv2_2094_12_60 65842 67560 - 1.B.52.2.2
TC HRGMv2_2094_12 HRGMv2_2094_12_61 67591 68793 - 9.B.34.1.3
Gene ID: HRGMv2_2094_12_49
Type: TC
Location: 54319 - 55494 (-)
Gene ID: HRGMv2_2094_12_50
Type: pfam
Location: 55833 - 56027 (-)
Gene ID: HRGMv2_2094_12_51
Type: pfam
Location: 56094 - 56291 (-)
Gene ID: HRGMv2_2094_12_52
Type: TC
Location: 56400 - 57326 (-)
Gene ID: HRGMv2_2094_12_53
Type: pfam
Location: 57323 - 58033 (-)
Gene ID: HRGMv2_2094_12_54
Type: CAZyme
Location: 58255 - 59766 (-)
Gene ID: HRGMv2_2094_12_55
Type: TF
Location: 59801 - 60811 (-)
Gene ID: HRGMv2_2094_12_56
Type: TC
Location: 60909 - 61781 (-)
Gene ID: HRGMv2_2094_12_57
Type: TC
Location: 61781 - 62623 (-)
Gene ID: HRGMv2_2094_12_58
Type: TC
Location: 62711 - 64123 (-)
Gene ID: HRGMv2_2094_12_59
Type: TC
Location: 64529 - 65788 (+)
Gene ID: HRGMv2_2094_12_60
Type: TC
Location: 65842 - 67560 (-)
Gene ID: HRGMv2_2094_12_61
Type: TC
Location: 67591 - 68793 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2094_12_51 vegan > omnivore 1.02613 0.02092

🧭 Explore Read Mapping of CGC

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