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Cluster: HRGMv2_2094_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2094_12 HRGMv2_2094_12_27 32089 33954 - 3.A.3.6.10
STP HRGMv2_2094_12 HRGMv2_2094_12_28 34020 34238 - HMA
TF HRGMv2_2094_12 HRGMv2_2094_12_29 34325 34684 - HTH_5
TC HRGMv2_2094_12 HRGMv2_2094_12_30 34912 36264 - 2.A.66.1.33
pfam HRGMv2_2094_12 HRGMv2_2094_12_31 36266 37021 - RelA_SpoT
CAZyme HRGMv2_2094_12 HRGMv2_2094_12_32 37433 38245 - GH77
TF HRGMv2_2094_12 HRGMv2_2094_12_33 38230 39192 - LacI
pfam HRGMv2_2094_12 HRGMv2_2094_12_34 39509 40714 - Amidohydro_2
TC HRGMv2_2094_12 HRGMv2_2094_12_35 40739 41578 - 3.A.1.1.45
TC HRGMv2_2094_12 HRGMv2_2094_12_36 41580 42422 - 3.A.1.1.45
TC HRGMv2_2094_12 HRGMv2_2094_12_37 42564 43928 - 3.A.1.1.45
CAZyme HRGMv2_2094_12 HRGMv2_2094_12_38 44135 46327 - GH31_3
pfam HRGMv2_2094_12 HRGMv2_2094_12_39 46385 46819 - F_bP_aldolase
TC HRGMv2_2094_12 HRGMv2_2094_12_40 46821 47768 - 8.A.5.1.4
pfam HRGMv2_2094_12 HRGMv2_2094_12_41 47849 48703 - F_bP_aldolase
TC HRGMv2_2094_12 HRGMv2_2094_12_42 48731 49678 - 8.A.5.1.4
Gene ID: HRGMv2_2094_12_27
Type: TC
Location: 32089 - 33954 (-)
Gene ID: HRGMv2_2094_12_28
Type: STP
Location: 34020 - 34238 (-)
Gene ID: HRGMv2_2094_12_29
Type: TF
Location: 34325 - 34684 (-)
Gene ID: HRGMv2_2094_12_30
Type: TC
Location: 34912 - 36264 (-)
Gene ID: HRGMv2_2094_12_31
Type: pfam
Location: 36266 - 37021 (-)
Gene ID: HRGMv2_2094_12_32
Type: CAZyme
Location: 37433 - 38245 (-)
Gene ID: HRGMv2_2094_12_33
Type: TF
Location: 38230 - 39192 (-)
Gene ID: HRGMv2_2094_12_34
Type: pfam
Location: 39509 - 40714 (-)
Gene ID: HRGMv2_2094_12_35
Type: TC
Location: 40739 - 41578 (-)
Gene ID: HRGMv2_2094_12_36
Type: TC
Location: 41580 - 42422 (-)
Gene ID: HRGMv2_2094_12_37
Type: TC
Location: 42564 - 43928 (-)
Gene ID: HRGMv2_2094_12_38
Type: CAZyme
Location: 44135 - 46327 (-)
Gene ID: HRGMv2_2094_12_39
Type: pfam
Location: 46385 - 46819 (-)
Gene ID: HRGMv2_2094_12_40
Type: TC
Location: 46821 - 47768 (-)
Gene ID: HRGMv2_2094_12_41
Type: pfam
Location: 47849 - 48703 (-)
Gene ID: HRGMv2_2094_12_42
Type: TC
Location: 48731 - 49678 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2094_12_33 vegetarian > vegan 1.07908 0.00114

🧭 Explore Read Mapping of CGC

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