Cluster: HRGMv2_2094_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_41 | 42255 | 43172 | + | 3.A.1.1.10 |
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_42 | 43187 | 44089 | + | 3.A.1.1.29 |
| STP | HRGMv2_2094_11 | HRGMv2_2094_11_43 | 44117 | 45847 | + | HATPase_c |
| TF | HRGMv2_2094_11 | HRGMv2_2094_11_44 | 45844 | 47448 | + | HTH_AraC |
| CAZyme | HRGMv2_2094_11 | HRGMv2_2094_11_45 | 47445 | 49658 | + | GH3 |
Gene ID: HRGMv2_2094_11_41
Type: TC
Location: 42255 - 43172 (+)
Type: TC
Location: 42255 - 43172 (+)
Gene ID: HRGMv2_2094_11_42
Type: TC
Location: 43187 - 44089 (+)
Type: TC
Location: 43187 - 44089 (+)
Gene ID: HRGMv2_2094_11_43
Type: STP
Location: 44117 - 45847 (+)
Type: STP
Location: 44117 - 45847 (+)
Gene ID: HRGMv2_2094_11_44
Type: TF
Location: 45844 - 47448 (+)
Type: TF
Location: 45844 - 47448 (+)
Gene ID: HRGMv2_2094_11_45
Type: CAZyme
Location: 47445 - 49658 (+)
Type: CAZyme
Location: 47445 - 49658 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_11_41 | vegan > omnivore | 1.17785 | 0.01054 |
| HRGMv2_2094_11_43 | vegan > omnivore | 1.57974 | 0.01577 |
| HRGMv2_2094_11_43 | vegetarian > omnivore | 1.30837 | 0.00245 |
| HRGMv2_2094_11_44 | vegan > omnivore | 1.25365 | 0.03598 |
| HRGMv2_2094_11_44 | vegetarian > omnivore | 1.30919 | 0.00245 |