Cluster: HRGMv2_2094_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_11 | HRGMv2_2094_11_28 | 27127 | 30180 | + | GH3 |
| pfam | HRGMv2_2094_11 | HRGMv2_2094_11_29 | 30347 | 30772 | + | Viral_helicase1 | AAA_14 |
| NULL(UNKNOWN) | HRGMv2_2094_11 | HRGMv2_2094_11_30 | 30750 | 31241 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_31 | 31553 | 32644 | + | 3.A.1.14.13 |
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_32 | 32673 | 33635 | + | 3.A.1.14.22 |
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_33 | 33632 | 34654 | + | 3.A.1.14.13 |
| TC | HRGMv2_2094_11 | HRGMv2_2094_11_34 | 34706 | 35512 | + | 3.A.1.14.22 |
Gene ID: HRGMv2_2094_11_28
Type: CAZyme
Location: 27127 - 30180 (+)
Type: CAZyme
Location: 27127 - 30180 (+)
Gene ID: HRGMv2_2094_11_29
Type: pfam
Location: 30347 - 30772 (+)
Type: pfam
Location: 30347 - 30772 (+)
Gene ID: HRGMv2_2094_11_30
Type:
Location: 30750 - 31241 (+)
Type:
Location: 30750 - 31241 (+)
Gene ID: HRGMv2_2094_11_31
Type: TC
Location: 31553 - 32644 (+)
Type: TC
Location: 31553 - 32644 (+)
Gene ID: HRGMv2_2094_11_32
Type: TC
Location: 32673 - 33635 (+)
Type: TC
Location: 32673 - 33635 (+)
Gene ID: HRGMv2_2094_11_33
Type: TC
Location: 33632 - 34654 (+)
Type: TC
Location: 33632 - 34654 (+)
Gene ID: HRGMv2_2094_11_34
Type: TC
Location: 34706 - 35512 (+)
Type: TC
Location: 34706 - 35512 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_11_28 | vegetarian > vegan | 1.10250 | 0.00114 |