Cluster: HRGMv2_2094_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_75 | 85027 | 86229 | + | GT4 |
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_76 | 86231 | 87364 | + | GT4 |
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_77 | 87444 | 88586 | + | GT4 |
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_78 | 88583 | 89464 | + | GT11 |
| TC | HRGMv2_2094_1 | HRGMv2_2094_1_79 | 89490 | 90830 | + | 2.A.66.2.10 |
| pfam | HRGMv2_2094_1 | HRGMv2_2094_1_80 | 90843 | 91913 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_81 | 91922 | 93004 | + | GT113 |
Gene ID: HRGMv2_2094_1_75
Type: CAZyme
Location: 85027 - 86229 (+)
Type: CAZyme
Location: 85027 - 86229 (+)
Gene ID: HRGMv2_2094_1_76
Type: CAZyme
Location: 86231 - 87364 (+)
Type: CAZyme
Location: 86231 - 87364 (+)
Gene ID: HRGMv2_2094_1_77
Type: CAZyme
Location: 87444 - 88586 (+)
Type: CAZyme
Location: 87444 - 88586 (+)
Gene ID: HRGMv2_2094_1_78
Type: CAZyme
Location: 88583 - 89464 (+)
Type: CAZyme
Location: 88583 - 89464 (+)
Gene ID: HRGMv2_2094_1_79
Type: TC
Location: 89490 - 90830 (+)
Type: TC
Location: 89490 - 90830 (+)
Gene ID: HRGMv2_2094_1_80
Type: pfam
Location: 90843 - 91913 (+)
Type: pfam
Location: 90843 - 91913 (+)
Gene ID: HRGMv2_2094_1_81
Type: CAZyme
Location: 91922 - 93004 (+)
Type: CAZyme
Location: 91922 - 93004 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.