Cluster: HRGMv2_2094_CGC18
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00859
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_34 | 39425 | 40696 | + | 3.A.1.1.47 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_35 | 40907 | 42217 | + | 3.A.1.1.47 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_36 | 42291 | 43223 | + | 3.A.1.1.47 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_37 | 43239 | 44093 | + | 3.A.1.1.47 |
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_38 | 44130 | 45437 | + | GH29 |
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_39 | 45457 | 48396 | + | CBM51 | CBM51 | GH98 |
| pfam | HRGMv2_2094_10 | HRGMv2_2094_10_40 | 48473 | 49735 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_41 | 49807 | 52035 | + | GH36 |
| pfam | HRGMv2_2094_10 | HRGMv2_2094_10_42 | 52385 | 54052 | + | PDDEXK_9 | AAA-ATPase_like |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_43 | 54385 | 54966 | + | 2.A.107.1.2 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_44 | 55334 | 56302 | + | 2.A.19.5.2 |
Gene ID: HRGMv2_2094_10_34
Type: TC
Location: 39425 - 40696 (+)
Type: TC
Location: 39425 - 40696 (+)
Gene ID: HRGMv2_2094_10_35
Type: TC
Location: 40907 - 42217 (+)
Type: TC
Location: 40907 - 42217 (+)
Gene ID: HRGMv2_2094_10_36
Type: TC
Location: 42291 - 43223 (+)
Type: TC
Location: 42291 - 43223 (+)
Gene ID: HRGMv2_2094_10_37
Type: TC
Location: 43239 - 44093 (+)
Type: TC
Location: 43239 - 44093 (+)
Gene ID: HRGMv2_2094_10_38
Type: CAZyme
Location: 44130 - 45437 (+)
Type: CAZyme
Location: 44130 - 45437 (+)
Gene ID: HRGMv2_2094_10_39
Type: CAZyme
Location: 45457 - 48396 (+)
Type: CAZyme
Location: 45457 - 48396 (+)
Gene ID: HRGMv2_2094_10_40
Type: pfam
Location: 48473 - 49735 (+)
Type: pfam
Location: 48473 - 49735 (+)
Gene ID: HRGMv2_2094_10_41
Type: CAZyme
Location: 49807 - 52035 (+)
Type: CAZyme
Location: 49807 - 52035 (+)
Gene ID: HRGMv2_2094_10_42
Type: pfam
Location: 52385 - 54052 (+)
Type: pfam
Location: 52385 - 54052 (+)
Gene ID: HRGMv2_2094_10_43
Type: TC
Location: 54385 - 54966 (+)
Type: TC
Location: 54385 - 54966 (+)
Gene ID: HRGMv2_2094_10_44
Type: TC
Location: 55334 - 56302 (+)
Type: TC
Location: 55334 - 56302 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_10_34 | vegetarian > vegan | 1.45547 | 0.00114 |
| HRGMv2_2094_10_35 | vegetarian > omnivore | 1.11335 | 0.00245 |
| HRGMv2_2094_10_36 | vegetarian > vegan | 1.43920 | 0.00114 |
| HRGMv2_2094_10_40 | vegetarian > vegan | 1.58692 | 0.00114 |
| HRGMv2_2094_10_41 | vegetarian > vegan | 2.21841 | 0.00114 |