Cluster: HRGMv2_2094_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_05433
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_22 | 21956 | 24352 | + | GH3 |
| pfam | HRGMv2_2094_10 | HRGMv2_2094_10_23 | 24554 | 25522 | + | PBP_like_2 | PBP_like_2 | SBP_bac_11 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_24 | 25659 | 26534 | + | 3.A.1.7.5 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_25 | 26541 | 27422 | + | 3.A.1.7.5 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_26 | 27532 | 28284 | + | 3.A.1.7.5 |
| pfam | HRGMv2_2094_10 | HRGMv2_2094_10_27 | 28394 | 29056 | + | PhoU | PhoU |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_28 | 29242 | 31002 | + | 2.A.58.2.2 |
Gene ID: HRGMv2_2094_10_22
Type: CAZyme
Location: 21956 - 24352 (+)
Type: CAZyme
Location: 21956 - 24352 (+)
Gene ID: HRGMv2_2094_10_23
Type: pfam
Location: 24554 - 25522 (+)
Type: pfam
Location: 24554 - 25522 (+)
Gene ID: HRGMv2_2094_10_24
Type: TC
Location: 25659 - 26534 (+)
Type: TC
Location: 25659 - 26534 (+)
Gene ID: HRGMv2_2094_10_25
Type: TC
Location: 26541 - 27422 (+)
Type: TC
Location: 26541 - 27422 (+)
Gene ID: HRGMv2_2094_10_26
Type: TC
Location: 27532 - 28284 (+)
Type: TC
Location: 27532 - 28284 (+)
Gene ID: HRGMv2_2094_10_27
Type: pfam
Location: 28394 - 29056 (+)
Type: pfam
Location: 28394 - 29056 (+)
Gene ID: HRGMv2_2094_10_28
Type: TC
Location: 29242 - 31002 (+)
Type: TC
Location: 29242 - 31002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_10_23 | vegetarian > vegan | 1.09315 | 0.00114 |