Cluster: HRGMv2_2094_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_13 | 9995 | 10999 | + | CE2 |
| TF | HRGMv2_2094_10 | HRGMv2_2094_10_14 | 11010 | 11870 | + | HTH_6 |
| CAZyme | HRGMv2_2094_10 | HRGMv2_2094_10_15 | 12062 | 13894 | + | GH20 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_16 | 13953 | 15272 | + | 3.A.1.1.40 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_17 | 15353 | 16249 | + | 3.A.1.1.20 |
| TC | HRGMv2_2094_10 | HRGMv2_2094_10_18 | 16242 | 17081 | + | 3.A.1.1.34 |
Gene ID: HRGMv2_2094_10_13
Type: CAZyme
Location: 9995 - 10999 (+)
Type: CAZyme
Location: 9995 - 10999 (+)
Gene ID: HRGMv2_2094_10_14
Type: TF
Location: 11010 - 11870 (+)
Type: TF
Location: 11010 - 11870 (+)
Gene ID: HRGMv2_2094_10_15
Type: CAZyme
Location: 12062 - 13894 (+)
Type: CAZyme
Location: 12062 - 13894 (+)
Gene ID: HRGMv2_2094_10_16
Type: TC
Location: 13953 - 15272 (+)
Type: TC
Location: 13953 - 15272 (+)
Gene ID: HRGMv2_2094_10_17
Type: TC
Location: 15353 - 16249 (+)
Type: TC
Location: 15353 - 16249 (+)
Gene ID: HRGMv2_2094_10_18
Type: TC
Location: 16242 - 17081 (+)
Type: TC
Location: 16242 - 17081 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_10_13 | vegetarian > omnivore | 2.96864 | 0.00245 |
| HRGMv2_2094_10_13 | vegetarian > vegan | 3.96945 | 0.00114 |
| HRGMv2_2094_10_14 | vegetarian > omnivore | 3.66072 | 0.00245 |
| HRGMv2_2094_10_14 | vegetarian > vegan | 3.33179 | 0.00114 |
| HRGMv2_2094_10_15 | vegetarian > omnivore | 3.04429 | 0.00245 |
| HRGMv2_2094_10_15 | vegetarian > vegan | 2.61482 | 0.00114 |
| HRGMv2_2094_10_16 | vegan > omnivore | 1.38732 | 0.03873 |
| HRGMv2_2094_10_16 | vegetarian > vegan | 1.89523 | 0.00114 |
| HRGMv2_2094_10_16 | vegetarian > omnivore | 3.28254 | 0.00245 |
| HRGMv2_2094_10_17 | vegetarian > vegan | 1.96389 | 0.00114 |
| HRGMv2_2094_10_17 | vegetarian > omnivore | 2.23616 | 0.00245 |
| HRGMv2_2094_10_18 | vegetarian > vegan | 2.16009 | 0.00114 |
| HRGMv2_2094_10_18 | vegetarian > omnivore | 1.52634 | 0.00245 |