Cluster: HRGMv2_2094_CGC15
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate: beta-mannan
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00226
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_53 | 59653 | 60930 | - | GH3 |
| NULL(UNKNOWN) | HRGMv2_2094_7 | HRGMv2_2094_7_54 | 60971 | 61252 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2094_7 | HRGMv2_2094_7_55 | 61294 | 61734 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_56 | 62087 | 64390 | - | GH1 |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_57 | 64460 | 65584 | - | CBM35inCE17 | CE17 |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_58 | 65733 | 66773 | - | CE2 |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_59 | 66884 | 67906 | - | GH130_2 |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_60 | 67977 | 69149 | - | GH130_1 |
| pfam | HRGMv2_2094_7 | HRGMv2_2094_7_61 | 69173 | 70405 | - | GlcNAc_2-epim |
| NULL(UNKNOWN) | HRGMv2_2094_7 | HRGMv2_2094_7_62 | 70425 | 71054 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2094_7 | HRGMv2_2094_7_63 | 71084 | 71929 | - | 3.A.1.1.18 |
| TC | HRGMv2_2094_7 | HRGMv2_2094_7_64 | 71926 | 72924 | - | 3.A.1.1.9 |
| STP | HRGMv2_2094_7 | HRGMv2_2094_7_65 | 73030 | 74415 | - | SBP_bac_1 |
| TF | HRGMv2_2094_7 | HRGMv2_2094_7_66 | 74804 | 75826 | - | LacI |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_67 | 76110 | 78302 | - | GH36 |
| pfam | HRGMv2_2094_7 | HRGMv2_2094_7_68 | 78337 | 80055 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2094_7 | HRGMv2_2094_7_69 | 80190 | 81146 | - | GH113 |
Gene ID: HRGMv2_2094_7_53
Type: CAZyme
Location: 59653 - 60930 (-)
Type: CAZyme
Location: 59653 - 60930 (-)
Gene ID: HRGMv2_2094_7_54
Type:
Location: 60971 - 61252 (-)
Type:
Location: 60971 - 61252 (-)
Gene ID: HRGMv2_2094_7_55
Type:
Location: 61294 - 61734 (-)
Type:
Location: 61294 - 61734 (-)
Gene ID: HRGMv2_2094_7_56
Type: CAZyme
Location: 62087 - 64390 (-)
Type: CAZyme
Location: 62087 - 64390 (-)
Gene ID: HRGMv2_2094_7_57
Type: CAZyme
Location: 64460 - 65584 (-)
Type: CAZyme
Location: 64460 - 65584 (-)
Gene ID: HRGMv2_2094_7_58
Type: CAZyme
Location: 65733 - 66773 (-)
Type: CAZyme
Location: 65733 - 66773 (-)
Gene ID: HRGMv2_2094_7_59
Type: CAZyme
Location: 66884 - 67906 (-)
Type: CAZyme
Location: 66884 - 67906 (-)
Gene ID: HRGMv2_2094_7_60
Type: CAZyme
Location: 67977 - 69149 (-)
Type: CAZyme
Location: 67977 - 69149 (-)
Gene ID: HRGMv2_2094_7_61
Type: pfam
Location: 69173 - 70405 (-)
Type: pfam
Location: 69173 - 70405 (-)
Gene ID: HRGMv2_2094_7_62
Type:
Location: 70425 - 71054 (-)
Type:
Location: 70425 - 71054 (-)
Gene ID: HRGMv2_2094_7_63
Type: TC
Location: 71084 - 71929 (-)
Type: TC
Location: 71084 - 71929 (-)
Gene ID: HRGMv2_2094_7_64
Type: TC
Location: 71926 - 72924 (-)
Type: TC
Location: 71926 - 72924 (-)
Gene ID: HRGMv2_2094_7_65
Type: STP
Location: 73030 - 74415 (-)
Type: STP
Location: 73030 - 74415 (-)
Gene ID: HRGMv2_2094_7_66
Type: TF
Location: 74804 - 75826 (-)
Type: TF
Location: 74804 - 75826 (-)
Gene ID: HRGMv2_2094_7_67
Type: CAZyme
Location: 76110 - 78302 (-)
Type: CAZyme
Location: 76110 - 78302 (-)
Gene ID: HRGMv2_2094_7_68
Type: pfam
Location: 78337 - 80055 (-)
Type: pfam
Location: 78337 - 80055 (-)
Gene ID: HRGMv2_2094_7_69
Type: CAZyme
Location: 80190 - 81146 (-)
Type: CAZyme
Location: 80190 - 81146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_7_54 | vegetarian > vegan | 1.05485 | 0.00114 |
| HRGMv2_2094_7_60 | vegetarian > vegan | 1.09997 | 0.00114 |