Cluster: HRGMv2_2094_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00106
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_5 | HRGMv2_2094_5_81 | 103584 | 105572 | - | GH13_14 |
| TF | HRGMv2_2094_5 | HRGMv2_2094_5_82 | 106228 | 107238 | - | LacI |
| CAZyme | HRGMv2_2094_5 | HRGMv2_2094_5_83 | 107543 | 109039 | + | GH77 |
| pfam | HRGMv2_2094_5 | HRGMv2_2094_5_84 | 109107 | 110387 | + | SBP_bac_1 | SBP_bac_8 |
| TC | HRGMv2_2094_5 | HRGMv2_2094_5_85 | 110498 | 111871 | + | 3.A.1.1.27 |
| TC | HRGMv2_2094_5 | HRGMv2_2094_5_86 | 111871 | 112746 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2094_5 | HRGMv2_2094_5_87 | 112973 | 114721 | + | GH13_36 |
Gene ID: HRGMv2_2094_5_81
Type: CAZyme
Location: 103584 - 105572 (-)
Type: CAZyme
Location: 103584 - 105572 (-)
Gene ID: HRGMv2_2094_5_82
Type: TF
Location: 106228 - 107238 (-)
Type: TF
Location: 106228 - 107238 (-)
Gene ID: HRGMv2_2094_5_83
Type: CAZyme
Location: 107543 - 109039 (+)
Type: CAZyme
Location: 107543 - 109039 (+)
Gene ID: HRGMv2_2094_5_84
Type: pfam
Location: 109107 - 110387 (+)
Type: pfam
Location: 109107 - 110387 (+)
Gene ID: HRGMv2_2094_5_85
Type: TC
Location: 110498 - 111871 (+)
Type: TC
Location: 110498 - 111871 (+)
Gene ID: HRGMv2_2094_5_86
Type: TC
Location: 111871 - 112746 (+)
Type: TC
Location: 111871 - 112746 (+)
Gene ID: HRGMv2_2094_5_87
Type: CAZyme
Location: 112973 - 114721 (+)
Type: CAZyme
Location: 112973 - 114721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_5_82 | vegetarian > vegan | 1.29980 | 0.00114 |