Cluster: HRGMv2_2094_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00233
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_5 | HRGMv2_2094_5_17 | 15321 | 18308 | + | GH3 |
| TF | HRGMv2_2094_5 | HRGMv2_2094_5_18 | 18440 | 19150 | + | LytTR |
| pfam | HRGMv2_2094_5 | HRGMv2_2094_5_19 | 19184 | 20488 | + | HATPase_c_5 |
| CAZyme | HRGMv2_2094_5 | HRGMv2_2094_5_20 | 20616 | 23441 | + | GH3 |
| pfam | HRGMv2_2094_5 | HRGMv2_2094_5_21 | 23729 | 24334 | + | Hydrolase | HAD |
| TC | HRGMv2_2094_5 | HRGMv2_2094_5_22 | 24402 | 25691 | - | 2.A.66.1.7 |
Gene ID: HRGMv2_2094_5_17
Type: CAZyme
Location: 15321 - 18308 (+)
Type: CAZyme
Location: 15321 - 18308 (+)
Gene ID: HRGMv2_2094_5_18
Type: TF
Location: 18440 - 19150 (+)
Type: TF
Location: 18440 - 19150 (+)
Gene ID: HRGMv2_2094_5_19
Type: pfam
Location: 19184 - 20488 (+)
Type: pfam
Location: 19184 - 20488 (+)
Gene ID: HRGMv2_2094_5_20
Type: CAZyme
Location: 20616 - 23441 (+)
Type: CAZyme
Location: 20616 - 23441 (+)
Gene ID: HRGMv2_2094_5_21
Type: pfam
Location: 23729 - 24334 (+)
Type: pfam
Location: 23729 - 24334 (+)
Gene ID: HRGMv2_2094_5_22
Type: TC
Location: 24402 - 25691 (-)
Type: TC
Location: 24402 - 25691 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.