Cluster: HRGMv2_2094_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_4 | HRGMv2_2094_4_49 | 55005 | 55925 | + | 9.A.40.2.2 |
| peptidase | HRGMv2_2094_4 | HRGMv2_2094_4_50 | 56018 | 56746 | + | M20.UNW |
| CAZyme | HRGMv2_2094_4 | HRGMv2_2094_4_51 | 56889 | 58346 | + | GT5 |
| peptidase | HRGMv2_2094_4 | HRGMv2_2094_4_52 | 58432 | 59124 | + | S14.UPW |
| pfam | HRGMv2_2094_4 | HRGMv2_2094_4_53 | 59222 | 60127 | + | BacA |
| TC | HRGMv2_2094_4 | HRGMv2_2094_4_54 | 60153 | 62792 | + | 3.A.12.1.1 |
Gene ID: HRGMv2_2094_4_49
Type: TC
Location: 55005 - 55925 (+)
Type: TC
Location: 55005 - 55925 (+)
Gene ID: HRGMv2_2094_4_50
Type: peptidase
Location: 56018 - 56746 (+)
Type: peptidase
Location: 56018 - 56746 (+)
Gene ID: HRGMv2_2094_4_51
Type: CAZyme
Location: 56889 - 58346 (+)
Type: CAZyme
Location: 56889 - 58346 (+)
Gene ID: HRGMv2_2094_4_52
Type: peptidase
Location: 58432 - 59124 (+)
Type: peptidase
Location: 58432 - 59124 (+)
Gene ID: HRGMv2_2094_4_53
Type: pfam
Location: 59222 - 60127 (+)
Type: pfam
Location: 59222 - 60127 (+)
Gene ID: HRGMv2_2094_4_54
Type: TC
Location: 60153 - 62792 (+)
Type: TC
Location: 60153 - 62792 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.