Cluster: HRGMv2_2094_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_4 | HRGMv2_2094_4_28 | 31913 | 32851 | + | 3.A.1.1.10 |
| TC | HRGMv2_2094_4 | HRGMv2_2094_4_29 | 32864 | 33760 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_2094_4 | HRGMv2_2094_4_30 | 33779 | 35449 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2094_4 | HRGMv2_2094_4_31 | 35466 | 36983 | + | GH32 |
Gene ID: HRGMv2_2094_4_28
Type: TC
Location: 31913 - 32851 (+)
Type: TC
Location: 31913 - 32851 (+)
Gene ID: HRGMv2_2094_4_29
Type: TC
Location: 32864 - 33760 (+)
Type: TC
Location: 32864 - 33760 (+)
Gene ID: HRGMv2_2094_4_30
Type:
Location: 33779 - 35449 (+)
Type:
Location: 33779 - 35449 (+)
Gene ID: HRGMv2_2094_4_31
Type: CAZyme
Location: 35466 - 36983 (+)
Type: CAZyme
Location: 35466 - 36983 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_4_29 | vegan > omnivore | 1.54717 | 0.02728 |
| HRGMv2_2094_4_30 | vegan > omnivore | 1.41512 | 0.01891 |