Cluster: HRGMv2_2094_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2094
- CGC Family ID: CGCFAM_00064
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2094_1 | HRGMv2_2094_1_66 | 73314 | 74147 | + | 3.A.1.104.1 |
| TC | HRGMv2_2094_1 | HRGMv2_2094_1_67 | 74183 | 75466 | + | 3.A.1.103.6 |
| NULL(UNKNOWN) | HRGMv2_2094_1 | HRGMv2_2094_1_68 | 75482 | 76396 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2094_1 | HRGMv2_2094_1_69 | 76398 | 79253 | + | GT2 |
| TC | HRGMv2_2094_1 | HRGMv2_2094_1_70 | 79285 | 80706 | + | 9.B.18.1.2 |
Gene ID: HRGMv2_2094_1_66
Type: TC
Location: 73314 - 74147 (+)
Type: TC
Location: 73314 - 74147 (+)
Gene ID: HRGMv2_2094_1_67
Type: TC
Location: 74183 - 75466 (+)
Type: TC
Location: 74183 - 75466 (+)
Gene ID: HRGMv2_2094_1_68
Type:
Location: 75482 - 76396 (+)
Type:
Location: 75482 - 76396 (+)
Gene ID: HRGMv2_2094_1_69
Type: CAZyme
Location: 76398 - 79253 (+)
Type: CAZyme
Location: 76398 - 79253 (+)
Gene ID: HRGMv2_2094_1_70
Type: TC
Location: 79285 - 80706 (+)
Type: TC
Location: 79285 - 80706 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.