Cluster: HRGMv2_2087_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_00224
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_206 | 218291 | 219925 | + | 3.A.1.1.29 |
| pfam | HRGMv2_2087_2 | HRGMv2_2087_2_207 | 220055 | 220486 | + | DUF3237 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_208 | 220483 | 223368 | + | GH115 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_209 | 223456 | 224598 | + | GH8 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_210 | 224641 | 225522 | + | CE1 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_211 | 225825 | 229931 | + | CBM22 | CBM86 | CBM9 | GH10 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_212 | 230169 | 231905 | + | CE17 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_213 | 231917 | 233476 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_214 | 233508 | 235652 | + | GH3 |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_215 | 235792 | 237558 | + | 8.A.59.2.1 |
| TF | HRGMv2_2087_2 | HRGMv2_2087_2_216 | 237609 | 239198 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_217 | 239345 | 241033 | + | 3.A.1.1.29 |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_218 | 241109 | 242065 | + | 3.A.1.1.29 |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_219 | 242078 | 242965 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_2087_2_206
Type: TC
Location: 218291 - 219925 (+)
Type: TC
Location: 218291 - 219925 (+)
Gene ID: HRGMv2_2087_2_207
Type: pfam
Location: 220055 - 220486 (+)
Type: pfam
Location: 220055 - 220486 (+)
Gene ID: HRGMv2_2087_2_208
Type: CAZyme
Location: 220483 - 223368 (+)
Type: CAZyme
Location: 220483 - 223368 (+)
Gene ID: HRGMv2_2087_2_209
Type: CAZyme
Location: 223456 - 224598 (+)
Type: CAZyme
Location: 223456 - 224598 (+)
Gene ID: HRGMv2_2087_2_210
Type: CAZyme
Location: 224641 - 225522 (+)
Type: CAZyme
Location: 224641 - 225522 (+)
Gene ID: HRGMv2_2087_2_211
Type: CAZyme
Location: 225825 - 229931 (+)
Type: CAZyme
Location: 225825 - 229931 (+)
Gene ID: HRGMv2_2087_2_212
Type: CAZyme
Location: 230169 - 231905 (+)
Type: CAZyme
Location: 230169 - 231905 (+)
Gene ID: HRGMv2_2087_2_213
Type: CAZyme
Location: 231917 - 233476 (+)
Type: CAZyme
Location: 231917 - 233476 (+)
Gene ID: HRGMv2_2087_2_214
Type: CAZyme
Location: 233508 - 235652 (+)
Type: CAZyme
Location: 233508 - 235652 (+)
Gene ID: HRGMv2_2087_2_215
Type: TC
Location: 235792 - 237558 (+)
Type: TC
Location: 235792 - 237558 (+)
Gene ID: HRGMv2_2087_2_216
Type: TF
Location: 237609 - 239198 (+)
Type: TF
Location: 237609 - 239198 (+)
Gene ID: HRGMv2_2087_2_217
Type: TC
Location: 239345 - 241033 (+)
Type: TC
Location: 239345 - 241033 (+)
Gene ID: HRGMv2_2087_2_218
Type: TC
Location: 241109 - 242065 (+)
Type: TC
Location: 241109 - 242065 (+)
Gene ID: HRGMv2_2087_2_219
Type: TC
Location: 242078 - 242965 (+)
Type: TC
Location: 242078 - 242965 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.