Cluster: HRGMv2_2087_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_00450
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_76 | 76906 | 78258 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2087_2 | HRGMv2_2087_2_77 | 78278 | 79333 | + | GT2 |
| pfam | HRGMv2_2087_2 | HRGMv2_2087_2_78 | 79343 | 80236 | + | LicD |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_79 | 80270 | 81046 | + | 3.A.1.103.1 |
| TC | HRGMv2_2087_2 | HRGMv2_2087_2_80 | 81082 | 81825 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_2087_2_76
Type: TC
Location: 76906 - 78258 (+)
Type: TC
Location: 76906 - 78258 (+)
Gene ID: HRGMv2_2087_2_77
Type: CAZyme
Location: 78278 - 79333 (+)
Type: CAZyme
Location: 78278 - 79333 (+)
Gene ID: HRGMv2_2087_2_78
Type: pfam
Location: 79343 - 80236 (+)
Type: pfam
Location: 79343 - 80236 (+)
Gene ID: HRGMv2_2087_2_79
Type: TC
Location: 80270 - 81046 (+)
Type: TC
Location: 80270 - 81046 (+)
Gene ID: HRGMv2_2087_2_80
Type: TC
Location: 81082 - 81825 (+)
Type: TC
Location: 81082 - 81825 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.