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Cluster: HRGMv2_2087_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2087_19 HRGMv2_2087_19_10 10035 11144 - CE9
pfam HRGMv2_2087_19 HRGMv2_2087_19_11 11174 11917 - Glucosamine_iso
CAZyme HRGMv2_2087_19 HRGMv2_2087_19_12 12160 13149 + CE2
TF HRGMv2_2087_19 HRGMv2_2087_19_13 13139 14014 + HTH_6
pfam HRGMv2_2087_19 HRGMv2_2087_19_14 14007 14972 + ROK
CAZyme HRGMv2_2087_19 HRGMv2_2087_19_15 15090 16928 + GH20
TC HRGMv2_2087_19 HRGMv2_2087_19_16 16942 18213 + 3.A.1.1.40
TC HRGMv2_2087_19 HRGMv2_2087_19_17 18309 19178 + 3.A.1.1.20
TC HRGMv2_2087_19 HRGMv2_2087_19_18 19171 20013 + 3.A.1.1.20
Gene ID: HRGMv2_2087_19_10
Type: CAZyme
Location: 10035 - 11144 (-)
Gene ID: HRGMv2_2087_19_11
Type: pfam
Location: 11174 - 11917 (-)
Gene ID: HRGMv2_2087_19_12
Type: CAZyme
Location: 12160 - 13149 (+)
Gene ID: HRGMv2_2087_19_13
Type: TF
Location: 13139 - 14014 (+)
Gene ID: HRGMv2_2087_19_14
Type: pfam
Location: 14007 - 14972 (+)
Gene ID: HRGMv2_2087_19_15
Type: CAZyme
Location: 15090 - 16928 (+)
Gene ID: HRGMv2_2087_19_16
Type: TC
Location: 16942 - 18213 (+)
Gene ID: HRGMv2_2087_19_17
Type: TC
Location: 18309 - 19178 (+)
Gene ID: HRGMv2_2087_19_18
Type: TC
Location: 19171 - 20013 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2087_19_13 vegetarian > vegan 1.19028 0.02379
HRGMv2_2087_19_14 vegetarian > vegan 1.56374 0.02211

🧭 Explore Read Mapping of CGC

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