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Cluster: HRGMv2_2087_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_15 HRGMv2_2087_15_30 34272 35558 - 2.A.115.2.14
TF HRGMv2_2087_15 HRGMv2_2087_15_31 35555 35998 - MarR
CAZyme HRGMv2_2087_15 HRGMv2_2087_15_32 36238 37185 + GH43_26
CAZyme HRGMv2_2087_15 HRGMv2_2087_15_33 37151 38701 + GH43_4
CAZyme HRGMv2_2087_15 HRGMv2_2087_15_34 38708 40216 + GH51_1
pfam HRGMv2_2087_15 HRGMv2_2087_15_35 40216 40536 + DUF6171
CAZyme HRGMv2_2087_15 HRGMv2_2087_15_36 40508 41761 + GH43_4
TF HRGMv2_2087_15 HRGMv2_2087_15_37 41825 42745 - HTH_5
STP HRGMv2_2087_15 HRGMv2_2087_15_38 43096 44538 + SBP_bac_1
TC HRGMv2_2087_15 HRGMv2_2087_15_39 44593 45516 + 3.A.1.1.20
TC HRGMv2_2087_15 HRGMv2_2087_15_40 45528 46397 + 3.A.1.1.11
Gene ID: HRGMv2_2087_15_30
Type: TC
Location: 34272 - 35558 (-)
Gene ID: HRGMv2_2087_15_31
Type: TF
Location: 35555 - 35998 (-)
Gene ID: HRGMv2_2087_15_32
Type: CAZyme
Location: 36238 - 37185 (+)
Gene ID: HRGMv2_2087_15_33
Type: CAZyme
Location: 37151 - 38701 (+)
Gene ID: HRGMv2_2087_15_34
Type: CAZyme
Location: 38708 - 40216 (+)
Gene ID: HRGMv2_2087_15_35
Type: pfam
Location: 40216 - 40536 (+)
Gene ID: HRGMv2_2087_15_36
Type: CAZyme
Location: 40508 - 41761 (+)
Gene ID: HRGMv2_2087_15_37
Type: TF
Location: 41825 - 42745 (-)
Gene ID: HRGMv2_2087_15_38
Type: STP
Location: 43096 - 44538 (+)
Gene ID: HRGMv2_2087_15_39
Type: TC
Location: 44593 - 45516 (+)
Gene ID: HRGMv2_2087_15_40
Type: TC
Location: 45528 - 46397 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2087_15_32 vegan > omnivore 1.07372 0.02699

🧭 Explore Read Mapping of CGC

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