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Cluster: HRGMv2_2087_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_2 HRGMv2_2087_2_12 6978 7625 - 1.C.113.1.1
TC HRGMv2_2087_2 HRGMv2_2087_2_13 7858 9099 + 2.A.55.2.6
TF HRGMv2_2087_2 HRGMv2_2087_2_14 9096 9989 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2087_2 HRGMv2_2087_2_15 10145 11812 + GH13_31
pfam HRGMv2_2087_2 HRGMv2_2087_2_16 11882 13336 + IMS | IMS_C
NULL(UNKNOWN) HRGMv2_2087_2 HRGMv2_2087_2_17 13333 13557 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2087_2 HRGMv2_2087_2_18 13611 14306 + CE4
pfam HRGMv2_2087_2 HRGMv2_2087_2_19 14388 15278 + DUF3737
pfam HRGMv2_2087_2 HRGMv2_2087_2_20 15275 15709 + SH3_4 | SH3_3
CAZyme HRGMv2_2087_2 HRGMv2_2087_2_21 15746 17983 + GH31_1
Gene ID: HRGMv2_2087_2_12
Type: TC
Location: 6978 - 7625 (-)
Gene ID: HRGMv2_2087_2_13
Type: TC
Location: 7858 - 9099 (+)
Gene ID: HRGMv2_2087_2_14
Type: TF
Location: 9096 - 9989 (-)
Gene ID: HRGMv2_2087_2_15
Type: CAZyme
Location: 10145 - 11812 (+)
Gene ID: HRGMv2_2087_2_16
Type: pfam
Location: 11882 - 13336 (+)
Gene ID: HRGMv2_2087_2_17
Type:
Location: 13333 - 13557 (+)
Gene ID: HRGMv2_2087_2_18
Type: CAZyme
Location: 13611 - 14306 (+)
Gene ID: HRGMv2_2087_2_19
Type: pfam
Location: 14388 - 15278 (+)
Gene ID: HRGMv2_2087_2_20
Type: pfam
Location: 15275 - 15709 (+)
Gene ID: HRGMv2_2087_2_21
Type: CAZyme
Location: 15746 - 17983 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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