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Cluster: HRGMv2_2087_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2087_12 HRGMv2_2087_12_15 15245 17278 + GH127
TF HRGMv2_2087_12 HRGMv2_2087_12_16 17275 18021 - HTH_AraC | HTH_AraC
TC HRGMv2_2087_12 HRGMv2_2087_12_17 18027 19811 - 8.A.59.2.1
TC HRGMv2_2087_12 HRGMv2_2087_12_18 20061 20939 + 3.A.1.1.28
TC HRGMv2_2087_12 HRGMv2_2087_12_19 20939 21778 + 3.A.1.1.45
STP HRGMv2_2087_12 HRGMv2_2087_12_20 21792 23102 + SBP_bac_1
CAZyme HRGMv2_2087_12 HRGMv2_2087_12_21 23190 25514 + GH31_3
CAZyme HRGMv2_2087_12 HRGMv2_2087_12_22 25519 27684 + GH36
Gene ID: HRGMv2_2087_12_15
Type: CAZyme
Location: 15245 - 17278 (+)
Gene ID: HRGMv2_2087_12_16
Type: TF
Location: 17275 - 18021 (-)
Gene ID: HRGMv2_2087_12_17
Type: TC
Location: 18027 - 19811 (-)
Gene ID: HRGMv2_2087_12_18
Type: TC
Location: 20061 - 20939 (+)
Gene ID: HRGMv2_2087_12_19
Type: TC
Location: 20939 - 21778 (+)
Gene ID: HRGMv2_2087_12_20
Type: STP
Location: 21792 - 23102 (+)
Gene ID: HRGMv2_2087_12_21
Type: CAZyme
Location: 23190 - 25514 (+)
Gene ID: HRGMv2_2087_12_22
Type: CAZyme
Location: 25519 - 27684 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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