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Cluster: HRGMv2_2087_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_39 42837 46964 - CBM23 | CBM27 | GH26
STP HRGMv2_2087_8 HRGMv2_2087_8_40 47378 47707 - NTP_transf_2
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_41 47860 48849 - CBM61 | GH53
TC HRGMv2_2087_8 HRGMv2_2087_8_42 48982 49827 - 3.A.1.1.6
TC HRGMv2_2087_8 HRGMv2_2087_8_43 49828 50739 - 3.A.1.1.2
TC HRGMv2_2087_8 HRGMv2_2087_8_44 50747 51967 - 3.A.1.1.6
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_45 51982 53055 - GH53
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_46 53058 53711 - CBM61
TF HRGMv2_2087_8 HRGMv2_2087_8_47 53914 54897 - LacI
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_48 55054 57366 - GH1
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_49 57383 58489 - CBM35inCE17 | CE17
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_50 58534 59583 - CE2
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_51 59586 60611 - GH130_2
CAZyme HRGMv2_2087_8 HRGMv2_2087_8_52 60626 61798 - GH130_1
pfam HRGMv2_2087_8 HRGMv2_2087_8_53 61802 62977 - GlcNAc_2-epim
TC HRGMv2_2087_8 HRGMv2_2087_8_54 63005 63880 - 3.A.1.1.47
TC HRGMv2_2087_8 HRGMv2_2087_8_55 63880 64905 - 3.A.1.1.23
Gene ID: HRGMv2_2087_8_39
Type: CAZyme
Location: 42837 - 46964 (-)
Gene ID: HRGMv2_2087_8_40
Type: STP
Location: 47378 - 47707 (-)
Gene ID: HRGMv2_2087_8_41
Type: CAZyme
Location: 47860 - 48849 (-)
Gene ID: HRGMv2_2087_8_42
Type: TC
Location: 48982 - 49827 (-)
Gene ID: HRGMv2_2087_8_43
Type: TC
Location: 49828 - 50739 (-)
Gene ID: HRGMv2_2087_8_44
Type: TC
Location: 50747 - 51967 (-)
Gene ID: HRGMv2_2087_8_45
Type: CAZyme
Location: 51982 - 53055 (-)
Gene ID: HRGMv2_2087_8_46
Type: CAZyme
Location: 53058 - 53711 (-)
Gene ID: HRGMv2_2087_8_47
Type: TF
Location: 53914 - 54897 (-)
Gene ID: HRGMv2_2087_8_48
Type: CAZyme
Location: 55054 - 57366 (-)
Gene ID: HRGMv2_2087_8_49
Type: CAZyme
Location: 57383 - 58489 (-)
Gene ID: HRGMv2_2087_8_50
Type: CAZyme
Location: 58534 - 59583 (-)
Gene ID: HRGMv2_2087_8_51
Type: CAZyme
Location: 59586 - 60611 (-)
Gene ID: HRGMv2_2087_8_52
Type: CAZyme
Location: 60626 - 61798 (-)
Gene ID: HRGMv2_2087_8_53
Type: pfam
Location: 61802 - 62977 (-)
Gene ID: HRGMv2_2087_8_54
Type: TC
Location: 63005 - 63880 (-)
Gene ID: HRGMv2_2087_8_55
Type: TC
Location: 63880 - 64905 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2087_8_42 vegetarian > vegan 1.11994 0.02211
HRGMv2_2087_8_51 vegetarian > vegan 1.07399 0.02211

🧭 Explore Read Mapping of CGC

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