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Cluster: HRGMv2_2087_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_6 HRGMv2_2087_6_12 12829 13902 + 3.A.1.11.8
TC HRGMv2_2087_6 HRGMv2_2087_6_13 13895 14719 + 3.A.1.11.1
TC HRGMv2_2087_6 HRGMv2_2087_6_14 14713 15492 + 3.A.1.11.7
TC HRGMv2_2087_6 HRGMv2_2087_6_15 15535 16608 + 3.A.1.11.7
pfam HRGMv2_2087_6 HRGMv2_2087_6_16 16748 17659 + DUF5688
CAZyme HRGMv2_2087_6 HRGMv2_2087_6_17 17714 19162 - GT5
STP HRGMv2_2087_6 HRGMv2_2087_6_18 19176 19976 - Response_reg | Spo0A_C
TC HRGMv2_2087_6 HRGMv2_2087_6_19 20102 21946 - 3.A.1.135.6
TC HRGMv2_2087_6 HRGMv2_2087_6_20 21948 24152 - 3.A.1.135.6
Gene ID: HRGMv2_2087_6_12
Type: TC
Location: 12829 - 13902 (+)
Gene ID: HRGMv2_2087_6_13
Type: TC
Location: 13895 - 14719 (+)
Gene ID: HRGMv2_2087_6_14
Type: TC
Location: 14713 - 15492 (+)
Gene ID: HRGMv2_2087_6_15
Type: TC
Location: 15535 - 16608 (+)
Gene ID: HRGMv2_2087_6_16
Type: pfam
Location: 16748 - 17659 (+)
Gene ID: HRGMv2_2087_6_17
Type: CAZyme
Location: 17714 - 19162 (-)
Gene ID: HRGMv2_2087_6_18
Type: STP
Location: 19176 - 19976 (-)
Gene ID: HRGMv2_2087_6_19
Type: TC
Location: 20102 - 21946 (-)
Gene ID: HRGMv2_2087_6_20
Type: TC
Location: 21948 - 24152 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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